Bcin020155.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000076.1:3313112-3314518[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.001 2.1 8.5 0.0 3 38 261 295 259 300 0.83 2 4 3.7e-10 7.7e-07 29.1 0.1 4 41 311 348 308 351 0.89 3 4 0.015 31 4.7 0.0 23 35 378 390 373 395 0.89 4 4 8.8e-12 1.8e-08 34.3 0.0 4 37 419 451 417 455 0.94
Sequence Information
- Coding Sequence
- ATGCGCAACGTGAAATGGCTAGACTACACGCGAAACATGATGGACATCCAGAAGAGCATCTACCTAAGCAGTTCCATGTATGATGTGTTGATTGCAGCCGGAGAGCTACGGTTCAAGGCACACCGTATAGTGCTGTCGGCGGCCAGTGATTTCTTGGCCACAATTCTGGACGATCATCCGGCCTGGGTGACACCCACAATTATTATACCAGACACAAGCCGTAAACTCATCGAGCCACTGTTAATGTTTGTCTACACTGGGCAAGTATACGTGCCACCGACCAGCCTGCCTGAATTCCTGAAGTTTTGCAGTTTTCTCCAGATCAAAGGTCTACAGAACTGCGAATGCTATGTGGATGATTGTCGTCATAACATTGTTGAAAATAGTGATAACATAGAAGAAATGCTCGATCAAAACCATCCTATTGAAGAGGTTATTGTCGACacattggaccaaacgcaggaCATAGCATCCGATGAACTTGATGCGAATATTATTATGGAACCGCTAGAATATATTGAAGACAAATCGTACGTCGAAATTGTCGAAGCAGACGATGACGAGAATGAAGATCTGAGCGTGGAGGGAACACTGCAAGCGGACGAAGAGCTGGACAGTGCATTAGACGAGTATCTGGAAGTGTTGACAGACAATCAGcagtcgaccgactctaattccaatgaaaaagaattaaatgtGACCTCAACGGAAATTACGATGCCAGCAAAGAGAATAAAATCCGAATTAAAACCATCAACAACACAAACAGACGTCAGTGATGCAAATCTCTATGAAGCATTTGATGCATTACGCTCAGGTCGAACCATTGACGAGATTTCGGATGAGTTTGACATCCCAAAATGTACGTTACTACAGAAACTTCGTCAGAACATAGAGTTCCGTGCCCTGTATCGTGAACTACGTAAAAAGGCTATGGAAGAAGCGGTAAAAGCGGTGAACACAGATGGTTTAAGTCTGCAGCAGGCCAGCCAAACGTTTGCTATATCAAAAACGGTCCTGTGGCGTCAACTGAAAAAGTCTAATGGATATCGACCCGAAGATCGGACACATCACATCCATCGGCCCGATGCAAACGAGGCCTTGGCCCGCGGTGAGTCTTTGATTAGTATCTCACGGAAATACAAGATTCCGTTGTCTACGTTGCATCGCGACAAGATGCGTCTGTTTGAACAAGGCAAAATGCCCGAATCGTGTACAATGAAGAAACGCAATGGTGGGCCAGCCTTTCAGAATCGATTAAAGGCAGCGCTTGAGTGTTGCGAGCGTGGCATGTCACAGAAACAAGCAGCTGAATTGCATAATATCCCGAAGACGACTATCTGGCGGCACGTGCACAATGTGATGAAGCCCATAGTTGCaattaaaattgagaaaattttaaattaa
- Protein Sequence
- MRNVKWLDYTRNMMDIQKSIYLSSSMYDVLIAAGELRFKAHRIVLSAASDFLATILDDHPAWVTPTIIIPDTSRKLIEPLLMFVYTGQVYVPPTSLPEFLKFCSFLQIKGLQNCECYVDDCRHNIVENSDNIEEMLDQNHPIEEVIVDTLDQTQDIASDELDANIIMEPLEYIEDKSYVEIVEADDDENEDLSVEGTLQADEELDSALDEYLEVLTDNQQSTDSNSNEKELNVTSTEITMPAKRIKSELKPSTTQTDVSDANLYEAFDALRSGRTIDEISDEFDIPKCTLLQKLRQNIEFRALYRELRKKAMEEAVKAVNTDGLSLQQASQTFAISKTVLWRQLKKSNGYRPEDRTHHIHRPDANEALARGESLISISRKYKIPLSTLHRDKMRLFEQGKMPESCTMKKRNGGPAFQNRLKAALECCERGMSQKQAAELHNIPKTTIWRHVHNVMKPIVAIKIEKILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00210934;
- 90% Identity
- iTF_00210934;
- 80% Identity
- iTF_00210934;