Bcin014213.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010007556.1:84653974-84656618[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4e-12 9.2e-09 35.2 0.0 1 39 368 407 368 411 0.90 2 4 1.2e-13 2.4e-10 40.3 0.1 1 39 422 460 422 463 0.94 3 4 1.4e-18 3e-15 56.0 0.0 1 45 477 522 477 522 0.97 4 4 9.9e-18 2.1e-14 53.3 0.0 1 40 529 569 529 573 0.95
Sequence Information
- Coding Sequence
- atgttgttgttcAGCCTCTTACTGTCAGCCGAAAGGCTAAAGATCAAAGGACTCTGCGAAACCGCTGACCGAGCCGAAATAGCCGAGAGCACACCGCTGAAACACAAGCGAAAACGCTCACACAGTCCAGACACTCAACAGTATCTGGAACAGTCATTGAGTGACATCGAAGACAGTCcacagaaacaacaacaacaacaacaacagtaccTGGACGACGAAGAACATACGACTGAAATAACTAGAAAAATAGTGTCCGACGATGCCACGTCCACAACGATTGTTGTGGAAGAGGGTGGCATTGTGCAAACGGTAACCTCTAAAAATATGGTCAGTATTCCGTTGcaaaACAACATGATGGGCGGCGTATCGATGGGCTTCCTGGACTTTGCACCCGAACCAGCAGCACCAGCTGCCACACCGGTCACCGAGCACCTAGACCTGAATTGCACACCGAGTAATGACACAAGAGACTTATCAAATTCCACATCAAACGGCGGCGGTGGTGACATCCGTATTAAGTTCGAGACACTACGCTCGATGGAACCAGAGGGTGGTGCACTCGACATCGATCCGAACTCAATGAACTTTCATCATATCTCAAGTCctaatcataatcatcatccGGTCGATGCAATTGTCCTGAAGACGCCAATCGTTGTGTCACAGCCACAGCAAATTCAAATTgtccagcagcagcagcaacaacaacaacatcatcaACAGCAGCAGATCCAGCAGCAACATAATCAGCAGAATCAGCAACAACATATTCAATTGCAGCAGATTCAGATTCAACAGCACCAACagcaacaccaacaacaacaacagcaacagcaaatCCACATGATAGAATCCGATCCATCGTCATCAATTGAAATGGAGATCGAATCGATTCATATCAAAGTAGAGAATAATTCCCAAATGAACTCTTCCGAAAATGCGGCAATGCTTAATTCGTCCATAGTGGAAATGTACAACAGTGAATCCAGCGAGGACTCAAAAATGATGCTGAACGGATCACCGACGGAGAACAGTTCACCGCAGTACACGATTCTCGGTGCATCTGACTGTAAATCGCAGGTAGGTCCGAAGACATGGACCCAAGAAGATATGGAACTGGCTCTCGATGCTTTGCGAACGCATAACATGAGTCTGACCAAAGCCTCGGTCACATATGGCATTCCGTCGACAACACTCTGGCAACGTGCTCACCGTTTGGGCATTGATACGCCTAAAAAGGAGGGTCCAACTAAATCGTGGAGCGAAGACTCACTGAATAATGCTTTGGACGCACTGCGCACGGGTCAAATATCGGCAAACAAGGCCTCGAAAGCGTACGGCATTCCTTCGTCGACCCTGTACAAGATTGCTAGACGCGAGGGTATCCGACTGGCGGCTCCGTTTAATGCGGCACCAACAACATGGTCTCCCGATGATTTAGAACGTGCCCTTGAAGCCATACGCACGGGTAACACGTCTGTGCAAAAGGCCAGCACGGAGTTTGGTATTCCAACGGGTACTCTGTACGGACGATGCAAGCGAGAAGGCATAGAGTTGTCGCGCTCGAATCCAACGCCATGGTCAGAAGATGCCATGATGGAAGCACTGGAGTCCGTTAGAATAGGACAGATGTCAATCAATCAAGCTGCCATACACTACAATCTACCCTATAGCTCGCTGTACGGTCGTTTCAAGCGCGGAAAATTTGATATTAGTGGACTGGAGACGATAAATACTTCCCAGATTGATCAGAGTCCAGAGAATTCGGTAAATTTAAGCTTGATGTGA
- Protein Sequence
- MLLFSLLLSAERLKIKGLCETADRAEIAESTPLKHKRKRSHSPDTQQYLEQSLSDIEDSPQKQQQQQQQYLDDEEHTTEITRKIVSDDATSTTIVVEEGGIVQTVTSKNMVSIPLQNNMMGGVSMGFLDFAPEPAAPAATPVTEHLDLNCTPSNDTRDLSNSTSNGGGGDIRIKFETLRSMEPEGGALDIDPNSMNFHHISSPNHNHHPVDAIVLKTPIVVSQPQQIQIVQQQQQQQQHHQQQQIQQQHNQQNQQQHIQLQQIQIQQHQQQHQQQQQQQQIHMIESDPSSSIEMEIESIHIKVENNSQMNSSENAAMLNSSIVEMYNSESSEDSKMMLNGSPTENSSPQYTILGASDCKSQVGPKTWTQEDMELALDALRTHNMSLTKASVTYGIPSTTLWQRAHRLGIDTPKKEGPTKSWSEDSLNNALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALEAIRTGNTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVRIGQMSINQAAIHYNLPYSSLYGRFKRGKFDISGLETINTSQIDQSPENSVNLSLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -