Bger001297.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000057.1:3133095-3152631[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00095 0.055 14.6 0.1 3 23 580 602 578 602 0.95 2 10 0.0062 0.36 12.0 5.8 1 23 608 632 608 632 0.98 3 10 9.3e-06 0.00053 20.9 0.4 1 23 638 662 638 662 0.97 4 10 0.011 0.65 11.2 0.2 3 23 670 692 668 692 0.95 5 10 0.0035 0.2 12.8 2.9 1 23 699 723 699 723 0.98 6 10 0.0037 0.21 12.7 1.4 2 23 731 754 730 754 0.94 7 10 1.6e-05 0.00089 20.2 2.5 1 23 760 784 760 784 0.98 8 10 2.5e-05 0.0014 19.5 0.5 1 23 790 814 790 814 0.97 9 10 0.00037 0.021 15.9 0.3 1 23 820 844 820 844 0.98 10 10 8.8 5.1e+02 2.1 7.1 1 23 857 882 857 882 0.96
Sequence Information
- Coding Sequence
- ATGTCTTGTAAAAGGATTCCTCAGGCAAATCGAAAAGGTCGCGGGCGAATTAAATATGATTACGATGATTTGAACAAATTAAGTTTCGATAAAGTCGCGAATTCGGACAGTATGGGATCAAAAACCATCCTGCAGGAAGACAACCAAGATGTCATTCAAAGTTCGCGTAATGGAGAATCATCGAGCGAATTAGAGATATCAGAATCTACTAATTTTTCTTTATCTTCACAACCGGAGATAGAATCAGATATTGCTGGTGTGAATGTAGAGGATTGGCTAAAGCCAAGACCTGGCATAGATTTAGATGCGGTAATGAAAGGTGAAGTGCTAGATACAACTTACCTTAATGATATTTTATCAAATAAGGATGTGGACATGACATGTATTGTAACAAACATTTGTGATTTAGGTTTAGGTTTAGATTTGCCAACAAATACTTCATCTAGATCAAAACACAAACCAGAAATATATATAGAAAAAGACTGTGATAACATTATATTGCATAGTTTTTCAGCTAATCAGGATCCTATGCTAAATGATCTTACTAGAAGTGATTTATTAGATACTAAAGATATCTTAGATGAAAATACTAGTATTAATAATGCACATAAAGATCTTCTTGATAGCGGAAAGTGTGAAAAACAGGGCCTGTCTTATGAAGGACAGTTTATTCCGATAGACTGTTCACCTAATTTAAGGAAGCAACATAAAGGATTTAAAGAAAACCTGTGGAATGGAAGTGAAATTACAGATGCTCAAACTTCAATAGAAGTAAGTAAAGACAGATCAAACTGGGAGAGTTTATCAACAACTAGTAAACGAAGTGTTGATGCAGATTCTGAAAAAGAAATTGATTTTCCagaattcaatttaattaccTTCCAAATTGATAATAATGATGCTATGTGTAACGTTACTCAGTTCCCTCAGGTAGAATCTAACAATAAAGAAATACAAGTCCCCTCCACAACTGATGTTAGTGAGAAAACTCTTCAAAATACCAATAACAAAACAGTTAATAGTCCACTATCAGTAAACATATCAGAAAATGAACAGTCACCTGTTCCAAATGAAACTGACACCATTGACAGAAACATTTCAAGTGTAAACACTGGCATTAACTCATTAACGACTAATGTACTTCAAAATACTGTTGCTCCAGTGTCAAACCCTCGTAGTTTGTTAAAGAGTCCTATTCGAACCTCTGTTGCTATAAAGAAGCCAAGCATTTTAAAACCAGAAACCTGCAGCTCAGCACAGTCATCAGAAGAAACTTCTAATGAAATATCACAAGAGAATCaaaaaaaaagttccaaaaaAACACCATCAATGGCTATTATAGCTATATCTACAGACAAGTCAAAGaatacaactgaaattgttataAATACACCATATGGAGAGCAGGTTTTCAAAGGAAAGACAACAGATTTAATGAAAGCTACAACTGGATTATGGCAGAAGTTGGATAGTAATATATTCCAAAAATCAGACCAACCTTTAACCATCAGTACACCGGATGGTGCAACAGAGCAGTCACCAATATTGGAAGGTGATGGGACTATTCCTTTGGTTGCCGAAGGTGCTGGTGATGGAATAGAGGAAGGAGAAGAATTTGGAGAACCTGGAACTGCTGATGAAGATAAACCTGTGGCTGATGCATTGGCTGACCTGGGTATTTCAGTAGACAAGGATATTTTCTTTATTACAACAGCAGCTGGGCAGAAGTTGTGGGCATGTCCTATCAAGGGTTGTGAAAGAATCTTTCAGAGACAGAGCATGTTGAAAGTCCATATTTTGAGTCATTTCAATGTCAGGCCATATAAGtgcAATTTTACAGGATGTCATTGGTCATTCTACACATATTTTAAACTGAGGAGGCATAAAGAAACACATTTAAAACGAAAAGACTTTGTGTGTCCTATAAATGGTTGTGGACGTCGTTTTACTACAATATATAACTTGAATACACATCAGAAACTTCATGAGCGACCTCTGGAAATGATTTGTCCTGTTGAGATGTGTGCCGCTCGTTTTCAAACAAAGAGAAGTCTGGAATTGCACATGAAAACACATGATAAACATCATGCTCCTTACAAATGTTCGTATGATGGTTGTGGGAAACACTACTATTCACTAAATTCACTGAACTCACATTCACGAAGCCATCAGCATAAAGAGGAAGAAGTGCGTTGTCAATGGAAAGGTTGTGGCAAACTTTTTGATAAACCTTGTAGGCTCAAGGCACACATGCGCTCACATACAGGCGATAAACCATACTCTTGTACATACCGGGACTGTGGCTGGGCATTTTCGAGTGCAAGCAAATTGAAACGGCATCAACACAAGCATACAAATGAGCGAAAATTCCAGTGTGGAGTGGAAGGCTGTGGCAAATCTTTTATGCGGTCTGAACATTTGAAGGAACATGCTCTAACACACATTGGCCAGAGGAATTTCCAATGTCCATATGAAgGTTGTGGGGTGAAATTCTCTGCAAAAAGTAGCTTATATGTCCATGTAAAGAAGCACAATAAGACTGAGTCAGAGACTGGTGATAAGGTTGTGTATCATTGTCCTATAGAAAAGTGCATCCGAACTTACACTTGTAAGTCTAGTCTGCGGCACCACATGCTCAAATTCCACACGCCAATCCTTGCTACAGATCCTAGTCAGCTAGATTATATTGCATTATTAACAGGGGATGATGAATTGGCAACATTGGAAGGTTTGCAGTTTTCTGGAGATATGGCAACAGCAGgaGGAATTAGCTCTTTGAATGCAATTAGTCTTGTTACTCCACCATCAATTCTCATGAGTACTGATGGTATGGGCTCAGTGCCTTCAGAGTTCATTTCCACTGaTTTTCAATTCCCAGGAATGTTATCACAGGTTTGTGCTACTCCTAGCAGTAGTACCACCTCTACAGTTACAAACAACAGTGTTATAACGCATGTTTTACTTGCACCTTCAGATAATCAAaattcaTCATTAGCAATGTCAAATGCATCTACAACCACGGAAGAAACTTCTGAAGATATTGATGTGACAACAGACCAAGCCCTTAGCATGGCACTCTTTGAGCCAGTTGCATTGGAGATTGAACCTAGTACAAGCGCAGTGCATGGTTCAGCTCGAACTAGTTATACGTATCAGGATATTGTGAGAGAGCGAGATCGCAGAAAAGGAAATGCAAGTCCCACACCAACCATATCTGCTGGCTTGAGGGTTCCAACAGATGTTGTATTAGGAACTGGAATCCAAGATATGTCTCACAGTTTCTTACTGCAGGATGATTTGACAAATCATCAGAACCTTTATTCTGAGGACCAACTGATGACTGTAAGCCCTGGAGTGGGAGAGTTCCAAGTTCTGCTGCTAGACCCATCAAGTAGCACTCGTCATGAGTTTGCAGAATCAACAATCAATCTACGAGACCTGGAATAA
- Protein Sequence
- MSCKRIPQANRKGRGRIKYDYDDLNKLSFDKVANSDSMGSKTILQEDNQDVIQSSRNGESSSELEISESTNFSLSSQPEIESDIAGVNVEDWLKPRPGIDLDAVMKGEVLDTTYLNDILSNKDVDMTCIVTNICDLGLGLDLPTNTSSRSKHKPEIYIEKDCDNIILHSFSANQDPMLNDLTRSDLLDTKDILDENTSINNAHKDLLDSGKCEKQGLSYEGQFIPIDCSPNLRKQHKGFKENLWNGSEITDAQTSIEVSKDRSNWESLSTTSKRSVDADSEKEIDFPEFNLITFQIDNNDAMCNVTQFPQVESNNKEIQVPSTTDVSEKTLQNTNNKTVNSPLSVNISENEQSPVPNETDTIDRNISSVNTGINSLTTNVLQNTVAPVSNPRSLLKSPIRTSVAIKKPSILKPETCSSAQSSEETSNEISQENQKKSSKKTPSMAIIAISTDKSKNTTEIVINTPYGEQVFKGKTTDLMKATTGLWQKLDSNIFQKSDQPLTISTPDGATEQSPILEGDGTIPLVAEGAGDGIEEGEEFGEPGTADEDKPVADALADLGISVDKDIFFITTAAGQKLWACPIKGCERIFQRQSMLKVHILSHFNVRPYKCNFTGCHWSFYTYFKLRRHKETHLKRKDFVCPINGCGRRFTTIYNLNTHQKLHERPLEMICPVEMCAARFQTKRSLELHMKTHDKHHAPYKCSYDGCGKHYYSLNSLNSHSRSHQHKEEEVRCQWKGCGKLFDKPCRLKAHMRSHTGDKPYSCTYRDCGWAFSSASKLKRHQHKHTNERKFQCGVEGCGKSFMRSEHLKEHALTHIGQRNFQCPYEGCGVKFSAKSSLYVHVKKHNKTESETGDKVVYHCPIEKCIRTYTCKSSLRHHMLKFHTPILATDPSQLDYIALLTGDDELATLEGLQFSGDMATAGGISSLNAISLVTPPSILMSTDGMGSVPSEFISTDFQFPGMLSQVCATPSSSTTSTVTNNSVITHVLLAPSDNQNSSLAMSNASTTTEETSEDIDVTTDQALSMALFEPVALEIEPSTSAVHGSARTSYTYQDIVRERDRRKGNASPTPTISAGLRVPTDVVLGTGIQDMSHSFLLQDDLTNHQNLYSEDQLMTVSPGVGEFQVLLLDPSSSTRHEFAESTINLRDLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -