Bger013477.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01001432.1:2087-51282[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.5 3.2e+02 2.7 1.9 9 23 190 205 181 206 0.86 2 10 0.066 3.8 8.8 0.2 1 23 440 462 440 462 0.97 3 10 5.6e-05 0.0032 18.4 3.0 1 23 467 489 467 489 0.97 4 10 0.0016 0.092 13.9 1.5 1 23 497 519 497 519 0.94 5 10 0.00018 0.011 16.8 3.8 1 23 525 547 525 547 0.97 6 10 2.1e-05 0.0012 19.8 2.9 1 23 553 575 553 575 0.98 7 10 1.3e-05 0.00076 20.4 2.0 1 23 581 603 581 603 0.95 8 10 1.1e-05 0.00062 20.7 0.7 1 23 611 633 611 633 0.98 9 10 7.6e-07 4.4e-05 24.3 0.7 1 23 639 661 639 661 0.97 10 10 2.3e-05 0.0013 19.7 1.6 1 23 667 689 667 689 0.97
Sequence Information
- Coding Sequence
- ATGAACTCTATCAATTCTGAAGTGAAGAACCTAGACATACcaggaatgaaaaaaataactggAAGCGTATTAGTAGACATTGTAGAGAAGAATAAGACTCCTGTGCAATCACAAAATGTATCTGAAGAGTTCTTCAAAACTCACCCTAAGTgggaaacatacttttttattgaATACAACGATATGGcattatgtttaatttgtatGACAAGCATAAGTATGagaaaatttaatatagaaaGGCATTATTCtaacaaacataaaaaagaaTATGCAGGTATTACTGAAAAGGAACGTATTTCAAAAATGGAAAGTTTTAAAGCAGAATTTATTAGGATTAAAAAATTGAATCTTGATCCAACTACATTTCATTCTGAAGAGTATGGAAGGATACAAAAATTGAATCTTGATCCAACTATATTTCATTCTGAAGAGTATGGAAGACAGAAtatttcagaagaaatttctACTAAGACAAATTCACAAGGTTTTAATCCAGAGTGGCAAAACTTGTTCTTTGTGCAGTTTGATGGGATGCCTAAGTGTTTAATTTGTTGTAGGACCCTAACTCTGTCAACAAAGTTTAATCTCCAGAGACATTATTTCAAAATACATCATGACCAGTATGGAATGTTAAATGATGAACAACGTATTGgggaaataaaaaatctaaaggaAAAGTTCTTTAAATTAAACCAGACAACAACTCCAACTTCACAAAATGGATCACATGAGTGTAATGTTAAACTAGATGTGGACTCTATGTCATTTGCTGAAATAAAAACTGAAACTGTGAATATAAAGGAAGAACCACAAGAATGTGAAACCAAGTGTTTTGTAAACACCTGTAGTCCAATTGATATTGATATGAAAAAAGAAGTCCAATGTGGTCCTGATTGTGTGAAATCTGAAATGCAGACTCCAACTTCACAAAATGGATCACATGAGTGTAATGTTAAACTAGATGTGGACTCTATGTCATTTGCTGAAATAAAAACTGAAACTGTGAATATAAAGGAAGAACCACAAGAATGTGAAACCAAGTGTTTTGTAAACACCTGTAGTCCAATTGATATTGATATGAAAAAAGAAGTCCAATGTGGTCCTGATTGTGTGAAATCTGAAATGCAGATGACAATAGAGCTTcaagataacaaaatacaagaccTTTCTACAGTAGAAAGTCATAATAAAAAGTCAATTTCTCAACCAAATGCTGATAATCGACCATGTTACCCTTGCAATATCTGTTCAATGAAATTCTTTTGCAAGAAAAGTTACAATAAACATCAGTGTTTTCATAAAGAGAATGAAAAGTATAAATGCGAATCATGTAATGTAACATACTTGAATGAAGATGAACTTGCCTCTCATATGGAATTTCATGTAGAGAGTCTTCATGTGTGTGAAATTTGTCATAAGAAGTTTCCTCTTAAGTGGTCTCTCCTCAGACATATGCTTAGGCACTCAAAGCAGACTAAGAAGTCTTTTAAATGTAGAAATTGTAACCAAGAATTTGAAAATGCATCTAAACTAAGAACTCATTCAGTTAGTCATACTGCACCTCGTACTCATGTCTGTGATATCTGCAACAAACAATTTTCTCTTAGAAGTGGTTTGTGTAAACATCGAATGATACACTTGGAATCTCGTCCTTACTCGTGCAATCTGTGTGGTAAATCTTTCGttcaaaaaaatgatttttttactcaTAAACAAAGACATACAGGGATTCGTCTGTTCTTGTGCGAATTTTGTGGAAAGACTTTCTACAGACATAGTGAACTGATGAACCATTTACTTGTTCATGGAGGTCAGAGaccatatacatatatatgtgaTATTTGTAAGAAATCCTTTCATGTTAAAAGTGGTCTTATAGACCATATGAATATTCATATGGGAAAAAGACCTTATGTTTGTGAAGTTTGTAACAAATCATTTAATCGCAAAGCTAATCTTAGAATTCACAAGATGCTTCACCAGCAGATTCGACCTCATGTCTGTGTTTTCTGCAACAAAGGATTTGCTCAGCAACGAAATCTCAGAAAACATTTACTTATCCATTAA
- Protein Sequence
- MNSINSEVKNLDIPGMKKITGSVLVDIVEKNKTPVQSQNVSEEFFKTHPKWETYFFIEYNDMALCLICMTSISMRKFNIERHYSNKHKKEYAGITEKERISKMESFKAEFIRIKKLNLDPTTFHSEEYGRIQKLNLDPTIFHSEEYGRQNISEEISTKTNSQGFNPEWQNLFFVQFDGMPKCLICCRTLTLSTKFNLQRHYFKIHHDQYGMLNDEQRIGEIKNLKEKFFKLNQTTTPTSQNGSHECNVKLDVDSMSFAEIKTETVNIKEEPQECETKCFVNTCSPIDIDMKKEVQCGPDCVKSEMQTPTSQNGSHECNVKLDVDSMSFAEIKTETVNIKEEPQECETKCFVNTCSPIDIDMKKEVQCGPDCVKSEMQMTIELQDNKIQDLSTVESHNKKSISQPNADNRPCYPCNICSMKFFCKKSYNKHQCFHKENEKYKCESCNVTYLNEDELASHMEFHVESLHVCEICHKKFPLKWSLLRHMLRHSKQTKKSFKCRNCNQEFENASKLRTHSVSHTAPRTHVCDICNKQFSLRSGLCKHRMIHLESRPYSCNLCGKSFVQKNDFFTHKQRHTGIRLFLCEFCGKTFYRHSELMNHLLVHGGQRPYTYICDICKKSFHVKSGLIDHMNIHMGKRPYVCEVCNKSFNRKANLRIHKMLHQQIRPHVCVFCNKGFAQQRNLRKHLLIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -