Bger019912.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- PGM3
- Assembly
- GCA_003018175.1
- Location
- PYGN01000208.1:340469-389245[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0021 0.12 13.5 0.6 2 23 701 722 700 722 0.97 2 12 0.11 6.5 8.0 0.5 3 23 800 820 798 820 0.96 3 12 0.14 8.1 7.7 0.1 2 23 867 888 866 888 0.96 4 12 0.00098 0.056 14.5 4.7 1 23 891 913 891 913 0.98 5 12 2.8e-08 1.6e-06 28.9 3.7 1 23 919 941 919 941 0.99 6 12 3.9e-06 0.00023 22.1 2.1 1 23 947 969 947 969 0.98 7 12 0.037 2.1 9.6 2.3 1 23 975 997 975 997 0.98 8 12 0.00012 0.007 17.4 0.6 1 23 1003 1025 1003 1025 0.98 9 12 3.4e-06 0.0002 22.3 1.3 1 23 1031 1053 1031 1053 0.99 10 12 6.4e-08 3.7e-06 27.7 0.6 1 23 1059 1081 1059 1081 0.98 11 12 0.0003 0.017 16.1 3.0 1 23 1087 1109 1087 1109 0.93 12 12 4.6e-05 0.0027 18.7 3.7 1 23 1115 1137 1115 1137 0.98
Sequence Information
- Coding Sequence
- ATGGATTTGTCAAATGCAACGAAAATTGGTCTTGAGAAACATACTCGAGCCAAAGAGGAAATTATACAGTATGGGACGGCAGGTTTCAGGACGAAGGCCGAATCTTTGGATCATGTCCTGTATCGCATGGGCTTGTTGGCTGTTCTTCGATCAAAGTCAAAAGGAGgAGCAGCAATTGGCCTGATGATCACAGCATCACATAACCCTGAACCTGACAATGGTGTGAAGCTGATTGACCCTCATGGGGAAATGCTGCAGCAAAGTTGGGAGGTGCATGCGACCAAACTTGCCAATATTAGTGATTCTGAACTAGGAACCGAGCTCAAGAGAATAGCCACTGACGAGTCCATCGACTGGGGAATTGCAGCCAAAGTGTTTGTTGGGCAAGATACCAGgccCAGCAGCCCAGCTCTTGCAAACGCAGCAGTAACAGGAATCAGAGCTTTAGGCGGGGAGGTGACGAACTTTGGCGTTGTGACCACTCCAATGCTTCACTTTTTTGTTGCCTGCACAAATACCAAAGGTGCTTATGGAGAGCCAACCGAGGAAGgctatttcaagaaattaatcacGGCCTTCAAGAACCTCAGGGGATCTATTTCAGAGGTTGGTAAATACTCTCCAAGCATTATATTTGATGGAGCAAACGGAGTAGGAGCGATAAAGATGAAAAAAGCAATGGATTACTTGGGGAACAGTTTGAAAGTGAAACTGTGTAATGATGGGGAAGGAAAGCTGAATCACATGtGTGGTGCAGATTATGTGAAAATGCAGCAATGTGCGCCTTCTGGGATTCCAGACGAGATAGGCACCCGTTGTGTATCTGTGGATGGAGATGCAGATCGTATAGTTTACTATTATACGGATGCAGACGCCAAGTTCCATTTGCTTGATGGTGACAGAATCGCTAGTCTTATTGCTGGTTACATTAAGGAGTTGTTGCAACAGAGCAGTTTGAGCCTTCAGCTCGGATTGGTACAGACGGCATACGCAAATGGAAGTTCCACAGATTACATAACCAATACTCTGAATGTGCCCGTGGCGTGTgcagcaacaggtgtgaaacattTGCATCACAAGGCCCTGGATTATGACATTGGAGTTTATTTTGAGGCTAATGGACATGGGACAGTGGTGTTTAGCGACACGGCTACTAAAGCAATTAATGCCGCCAAAACTAACCCGAGTTTATCTTCAGATCAGAGACTGGCCGTTGAAAGGTTGGCATCCCTGATGGATGTGATAAACCAAACAGTTGGCGATGCCATATCGGACTTGTTGGTCGTAGAGACGGTATTACATGCGAAAGGTTGGAACGTTCAAGACTGGGAGGCAGCGTACAGAGACCTGCCCAACAAACAAATGAAGGTTCAAGTGAACGAGATGATGGAAAAAATGAAGGAAGAAGTTGAAGAATTAGAAACCAAGATGGTTATTTCTAatcattttgaaaacatttacATAAAACAAGAAAATGAATCTATAGATTATGCATCTCCTGTCATCAAACTTGAACCACAGGATATTGGAGAAGAAATTATGGGAACTTCAGTGGTGAAGCGTGAGAATGAGATCAACGTGTGTGAACACCAACACACGATAAAATATAATTCCTTGATTGTGGACAAAGATCCAGGAGTTTGGTGCAAGGACTGCAGTGTTATCTCAGAATTCGAAGAAAACAAACACACACTTCAAAATAATGTCTATAATTCACTTCAAACAAATCCAAATAAacctaaagaagaaaaatatcatGTTCAGAATAATGAATCATTCTGTACAATTCCAAAATCCGAAGAGAAATGCAATGTAGAGTGTATGTATGAGAACttccaaattgttttaaaaacagaaaatactgATCCAGTAGATGGCGATGAAGACTTCAGTGAAACGACACAGCTATTTTGCGGAAAGTGCAATATGTTATTTTGTAACCCTGCAGAGCGTGCAGAACATGGCTGTGATTTATGGTgtgaaaaatgcaaaatattattCAGTGGCCCCTCAGAATCTGAGAAACATGAATGTGTGCTCGAAAGTCCTCCTGATTGTAGTGAGGAATTGGCAAACGGACATTCACAAATTAACGACCTTCAATGTGGTCTTTGCAAAATGACATTTAACGTGCAAAGCGAACTTGATTCACACAAGAATactcataataataaaaagaagaagaagaaaaagaaaaagaggaaaaaggtgaacaataatgaaaatgatgttTTAAAGTCAGTTGTTGAAAATGTACCATTGTGGTGTGAAAGTTGTAATCTTCTATTCTGTAATGCTGTAGAATCCAAAGAACATGTCTGCGCTACTTATAACTCGGAAGAAAAATTACGTGTAGAAGCTGACAAGGAAATATCTGAAGTTAAGAGTCTTCTGTTTTGTAGTCTTTGCAATTTATCAATGAACTCTCAAACTGAACTAGACACTCACATGGAAACTCACAATTCAGATTTAGATGATACAAATTTAAATGATAATTTGACTACAACAAACGAAAATGACAATTTCCAAGATAATCTATCAGAGTTTGATGAATGTGTTGATCAGTTGAAATCTTCTGAAGAAGCGGAAGAGAATGTTGTGTGCAAGTTTTGCAATATATCGTTGAATTCAAAATTGGAACTTGATTTGCATATGGAAATTCACAAAAAATTTTCTTGTGCtgtttgtcagaaaaaatatacACACAAATGTAATTTGGTAACACACATGGCATCACACACTGGAGATAGACCTTTTCAATGTAAACATTGCGGTAAAACTTATTCTTATTCAAGCAATTTGATAGCTCACATGCGAAAGCACACTGGGGAAAGACCTTATTCTTGTGAAGTATGCAATAAAACTTTTTCAGTGAAACAAAGTCTAACTCATCATATGTTAATACATACTGGTAAAAAACCATTTCAATGTGATACGTGTTGTCAAAGCTTTCCATCTAAAAAAGTACTCTTGAACCATATTAAGATACATATTGGGGCAAGGCCCTTTGTTTGTGAAGTGTGTAACAATTCATTTCTAAGAAAATCCGGTCTTAAAATCCATATGAGAAGTCACACAGGCGATCGACCATATACTTGTCCCACTTGTAACAAGACTTTTGCTTACAGCAATAGCTTAAGAGTACATAAGCGAATTCATACAGGAGACAATCCTTACCAATGTTTTGTGTGTGGAAAGGCATTTAGTCAGCAGAGCAACCTGTTTGCACATATGTATGTTCACACCGATGATCGACCGTTTATGTGCACTGTTTGCAGAAAAGGATTTTGTCGTAAAGATGATCTTAAAAAACATTCAGTTGTTCACACACATAAACATCCGTTTGAATGTACAGTTTGTAGCAAAGGATTTGGCCGTAAACAGAAACTCACAAGACATATGCACACACATAATAGAGTTTCCTCTCAACCAAATAATTTGTTAATGCCTGATAAGTTGGAACCCACTGATTTTCTTAAACAAGAGTTTTATGATTCTGAATAA
- Protein Sequence
- MDLSNATKIGLEKHTRAKEEIIQYGTAGFRTKAESLDHVLYRMGLLAVLRSKSKGGAAIGLMITASHNPEPDNGVKLIDPHGEMLQQSWEVHATKLANISDSELGTELKRIATDESIDWGIAAKVFVGQDTRPSSPALANAAVTGIRALGGEVTNFGVVTTPMLHFFVACTNTKGAYGEPTEEGYFKKLITAFKNLRGSISEVGKYSPSIIFDGANGVGAIKMKKAMDYLGNSLKVKLCNDGEGKLNHMCGADYVKMQQCAPSGIPDEIGTRCVSVDGDADRIVYYYTDADAKFHLLDGDRIASLIAGYIKELLQQSSLSLQLGLVQTAYANGSSTDYITNTLNVPVACAATGVKHLHHKALDYDIGVYFEANGHGTVVFSDTATKAINAAKTNPSLSSDQRLAVERLASLMDVINQTVGDAISDLLVVETVLHAKGWNVQDWEAAYRDLPNKQMKVQVNEMMEKMKEEVEELETKMVISNHFENIYIKQENESIDYASPVIKLEPQDIGEEIMGTSVVKRENEINVCEHQHTIKYNSLIVDKDPGVWCKDCSVISEFEENKHTLQNNVYNSLQTNPNKPKEEKYHVQNNESFCTIPKSEEKCNVECMYENFQIVLKTENTDPVDGDEDFSETTQLFCGKCNMLFCNPAERAEHGCDLWCEKCKILFSGPSESEKHECVLESPPDCSEELANGHSQINDLQCGLCKMTFNVQSELDSHKNTHNNKKKKKKKKKRKKVNNNENDVLKSVVENVPLWCESCNLLFCNAVESKEHVCATYNSEEKLRVEADKEISEVKSLLFCSLCNLSMNSQTELDTHMETHNSDLDDTNLNDNLTTTNENDNFQDNLSEFDECVDQLKSSEEAEENVVCKFCNISLNSKLELDLHMEIHKKFSCAVCQKKYTHKCNLVTHMASHTGDRPFQCKHCGKTYSYSSNLIAHMRKHTGERPYSCEVCNKTFSVKQSLTHHMLIHTGKKPFQCDTCCQSFPSKKVLLNHIKIHIGARPFVCEVCNNSFLRKSGLKIHMRSHTGDRPYTCPTCNKTFAYSNSLRVHKRIHTGDNPYQCFVCGKAFSQQSNLFAHMYVHTDDRPFMCTVCRKGFCRKDDLKKHSVVHTHKHPFECTVCSKGFGRKQKLTRHMHTHNRVSSQPNNLLMPDKLEPTDFLKQEFYDSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -