Bger027190.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000073.1:2142673-2153888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.5e-05 0.002 19.1 0.3 1 23 764 786 764 786 0.98 2 11 2.7e-05 0.0015 19.4 5.0 1 23 792 814 792 814 0.97 3 11 0.00014 0.008 17.2 0.7 1 23 821 843 821 843 0.98 4 11 0.00071 0.041 15.0 5.5 1 23 849 871 849 871 0.98 5 11 0.00034 0.02 16.0 1.7 1 23 877 899 877 899 0.99 6 11 2.3e-06 0.00013 22.8 0.6 1 23 905 927 905 927 0.98 7 11 0.00059 0.034 15.2 2.0 1 23 933 955 933 955 0.97 8 11 2.1e-05 0.0012 19.8 1.8 1 23 961 983 961 983 0.98 9 11 1e-05 0.00059 20.8 0.8 1 23 987 1011 987 1012 0.94 10 11 2.8e-06 0.00016 22.6 2.1 1 23 1018 1041 1018 1041 0.98 11 11 0.054 3.1 9.1 1.9 1 20 1047 1066 1047 1068 0.94
Sequence Information
- Coding Sequence
- ATGAATTTTGATGTGATTTGTCGACTTTGCATGACCAATGATAAAGGCTTACTTCCACTTTTTGATCAACGTGAAAACTTACCAacgaaaataaaaacttttgctCCTGAACTTGAGaTACTTGCTGGAGATGATTTACCTGATCAAATTTGTTACCCATGTGCACTCAAAGTGGATTCATTCTACAATTTTAAACAACAatgtaaaaaaacagattttGAGTTGCGAGAATACCTTAAAGAACAGGATTTGGCATCAAAACAGATGCAGGATGACTTAACATGTAAAGATGCTACCTTTGGCCTAGAAGTTCTTCCTGACgatttaatttcaacaataaatGATATTGAAAGTGACAATATACTAATTGTTCCCAATTATAATGGACAAGTACTTTCATCAGTGGGTCCTCAGCATGAAGAAaaccaattaatatttattcccagcaaaaatgaacatttattttcttcattcaaCAACAAAGAAATAAACCAAGAAATAGTAATTGCTCCCAACAGCGATGAAACATTATATACACCACTTACTAAAGTTCAAGAACCCCAAAGCATACTAATTTTTTCCACCAACAGTGAACAATTAGTTTCAAATAACAATGTAGAAGTAGTTTCATTGAACAAAAATGAAGAGGTAGTTTCATCTAACAGCAATAACAGTGAACAATTAGTTTCTTTGAATAACAATGAACAATTAGTTTCATTTAACAACAATGAACAATTAGTATCATTggacaacaatgaacaaatagtATCATTGGACAACAATAAACGATTAGTATCGTTGAACAACAATGAACAATTAGTTTCATTGAACAACAAAGTAGGGTTAGTTACATTTAATAACCATGAACAATTTGTTTCTTTGAACAACAATGAACAATTTGTTTCTTTGAACAGTGAACAATTAGCTTCATTGAACAACAATGAAGAAGTAGTCTCATTTAACAACAATGAACAATTAATATCATTGGAAAACAATGAACAATTAGTATCATTGAACAACAATAAACGATTAGTTTCATTGGACAATAATGAACGATTAGTTTCATTGGACAATAATGAACAATTAGTTTCATTGAACAACAATGAAGAGGTAGTTACATTTAACAGGAATGATCAATTTGTTTCTTTAAACAACAATGAACAATTTGTTTCTTTGAACAACAGTGAAGAATTAGTTTCATTGAACTACAAAGAAGAGGTAGTTTCATTTAACAACAATGAACAACTTGTTTCATTGAACAACAGTGAACAATTAGTTTCATTGAACAGCAATGAAGAGGTAGTTTCATTTAACAACAAAGAACAACTTATTTCATTGAACAACAGTGAACGATTAGTTTCATTGAACAACAAAGAAGAGGTAGTTTCATTTAACAACAATGAGCAACTCATTTCATTGAACAACAGTGAACGATTAGTTTCACTGAACAACAATGAAGAGGTAGTTTCATTTAACAACAATGATCAACTAGTTTCTTTGAACAGTAGTGAGCGATTAGTTTCAAATAACAATGTAGAGGTAGTTTCATTGAACAACAATGAAGAGGTAGTATCATTGAACAGTGAAAGATTAGTTtcattaaacaacaatgaagAGTTAGTTTCATTTAACAACAATGAACAGTTAGTTTCATTGAACAACAATGAAGATGTAGTATCATTGAACAGTGAAAGATTAGTTtcattaaacaacaatgaagAGTTAGTTTCATGTAACAACAATCAACAATTAGTTTCATTGAACAACAGTGAACAACTAATTTCATTTCTCAACAATGAACAATTAGTTTTATTGAACAACAATgaacaattaatttcatttatcaaCAATGAAGAAAACGAGGGCTTAGTAATTTATCCTAACGGTGATGAAGAGTTTCAAACTGTGGATGTCATAGGAGAAAGTAGTCAGATTTTGTTAGAAGAAAATCAGGATTACTATTCAGACAACTATGACGAACAAAGTTCAATAAAAGAAGTGGTCAAACCCAAAGTACGAAGAGGAAGAATTTTAAagtgcaaaaaaaaatcagcttcagagTCTGTTTGCCTGTCGGAAGTCAGTGAAATAAATCAGGAGACTCCAGAAAAGAGTGAAATACAAAGAGTTAATACAGACCAGAACATAAAAACTTTCATTTTACATAGACCaagagttttaaaatttgaaaaaaatccaCTTTCATTGTCCGAAGTCAATGAAACAAATCAGAAGGTTCCAGAAAAGAATGAAGTAAAAAGAGATAATGAAGACAATGACATAAAACCTTTTGAATGTGGAATATGTGGCTTGTCTTATGATCAGAAAGAAAATTTTGACAAACATATCAAGTCTCACAAAGGTTCCAAACCCTATAAATGTAGTGAATGCAGTAAAGCTTTCACAACAAAACATACTCTTAAAAGGCATTTTATATCACACATGAGTGGAGAACGGCCATTTACTTGCAATGTATGTAACAAATATTTGGGTGACAATTCTGCTCTTAAGACCCATATGCTGAAACACACAGGTGAAAAGCCttttaattgtactgtatgtaaaaaatcatttcaaactgaaaaatacttaaaaattcatcataaaactcatattggAGAGAAATCTTACCAATGTCAGTTATGTGCAAGAGCTTTCAGCAAACACTGGTCATACACAATTCATATGAGAGTCCATAATGGTGAAAAACCCTTTTCATGTGAGTTATGTGATAAATCATTTGTCGATCAGAGTGCTAGAGCTCGCCATATGAAAACTCATACAGGTGAGAAATCTTTTTATTGTCAAATATgtgataaacattttcttcaaaGGAGTGCTTTGACTATTCACATGACATTGCATACTGGTGAAAAACTGTTTGAGTGTGAATTTTGTGGTTCAAAATTTAGTCATAAGGCTGCACTCACTACACATATCAGAAGTCACATCAAACTTTTCATGTGTAAAGAGAGTGGGTGTGGCAAATCATTTCGTAATGCTAGTACTCTTGCTGCACATGTAAGTCGCCACCACAGAGGAGAGAAACCGTACAAATGTACTTTGTGTGATAAAACTTTTGCTCAGAATTCTTATCTTCAAGAACATACTAATAGGTATCATACAAAAGAAACACCTTATACATGTTCAATTTGTGGAGGAGGTTTCTTTTCAAGAAGCCATATAATTCGACATTCGTGTAAGGGCGAAGTCTCACTGGATCGAATGAACGACCAATCAGACGAATATAAAGGAACAAACACATGGAGCACAGttgtacctgtctcataa
- Protein Sequence
- MNFDVICRLCMTNDKGLLPLFDQRENLPTKIKTFAPELEILAGDDLPDQICYPCALKVDSFYNFKQQCKKTDFELREYLKEQDLASKQMQDDLTCKDATFGLEVLPDDLISTINDIESDNILIVPNYNGQVLSSVGPQHEENQLIFIPSKNEHLFSSFNNKEINQEIVIAPNSDETLYTPLTKVQEPQSILIFSTNSEQLVSNNNVEVVSLNKNEEVVSSNSNNSEQLVSLNNNEQLVSFNNNEQLVSLDNNEQIVSLDNNKRLVSLNNNEQLVSLNNKVGLVTFNNHEQFVSLNNNEQFVSLNSEQLASLNNNEEVVSFNNNEQLISLENNEQLVSLNNNKRLVSLDNNERLVSLDNNEQLVSLNNNEEVVTFNRNDQFVSLNNNEQFVSLNNSEELVSLNYKEEVVSFNNNEQLVSLNNSEQLVSLNSNEEVVSFNNKEQLISLNNSERLVSLNNKEEVVSFNNNEQLISLNNSERLVSLNNNEEVVSFNNNDQLVSLNSSERLVSNNNVEVVSLNNNEEVVSLNSERLVSLNNNEELVSFNNNEQLVSLNNNEDVVSLNSERLVSLNNNEELVSCNNNQQLVSLNNSEQLISFLNNEQLVLLNNNEQLISFINNEENEGLVIYPNGDEEFQTVDVIGESSQILLEENQDYYSDNYDEQSSIKEVVKPKVRRGRILKCKKKSASESVCLSEVSEINQETPEKSEIQRVNTDQNIKTFILHRPRVLKFEKNPLSLSEVNETNQKVPEKNEVKRDNEDNDIKPFECGICGLSYDQKENFDKHIKSHKGSKPYKCSECSKAFTTKHTLKRHFISHMSGERPFTCNVCNKYLGDNSALKTHMLKHTGEKPFNCTVCKKSFQTEKYLKIHHKTHIGEKSYQCQLCARAFSKHWSYTIHMRVHNGEKPFSCELCDKSFVDQSARARHMKTHTGEKSFYCQICDKHFLQRSALTIHMTLHTGEKLFECEFCGSKFSHKAALTTHIRSHIKLFMCKESGCGKSFRNASTLAAHVSRHHRGEKPYKCTLCDKTFAQNSYLQEHTNRYHTKETPYTCSICGGGFFSRSHIIRHSCKGEVSLDRMNDQSDEYKGTNTWSTVVPVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -