Bger020866.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000929.1:164022-175225[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0036 0.21 12.7 0.3 1 23 118 140 118 140 0.97 2 15 6.1e-05 0.0035 18.3 3.5 1 23 146 168 146 168 0.97 3 15 7.5e-05 0.0043 18.0 0.3 1 23 174 196 174 196 0.94 4 15 0.05 2.9 9.2 0.4 2 23 203 224 202 224 0.96 5 15 0.0029 0.17 13.0 3.9 1 23 230 252 230 252 0.98 6 15 2.9e-05 0.0017 19.3 1.0 1 23 259 281 259 281 0.98 7 15 6.6e-06 0.00038 21.4 5.4 1 23 287 309 287 309 0.98 8 15 4.9e-08 2.8e-06 28.1 2.0 1 23 315 337 315 337 0.99 9 15 0.00039 0.022 15.8 4.0 1 23 343 365 343 365 0.97 10 15 0.046 2.7 9.3 0.3 1 19 405 423 405 425 0.93 11 15 5 2.9e+02 2.9 3.9 1 19 442 460 442 462 0.85 12 15 9.7 5.6e+02 2.0 0.4 2 9 458 465 457 468 0.87 13 15 1.7e-05 0.00098 20.1 1.5 2 23 479 500 478 500 0.94 14 15 9.8e-05 0.0056 17.7 2.7 1 23 515 537 515 537 0.95 15 15 0.00043 0.025 15.7 0.7 1 19 551 569 551 569 0.95
Sequence Information
- Coding Sequence
- ATGATTTGTGAAGAAAACTGGAATCATGCTCCTTCAGAAATGGAGGATCtcaattGTGAATCTCAAGATCTTAGTGGTCAGGATGCTGTAGAAGAGACATTTATTATAGGTCTGGATCCATCATTACCACAGTGCAGCAGTAGTTATACAGATGAAGAGGTTGAAGATGATGACAGTGACGACTATGATTATCCTATGGTCAGAACTAGAagaacaagaaagaagtctaaatataataccaataataaacaGGATGAAGATGAATCTTTTATAGTAAGTTTGGACCCGTCGGAACTGTTATCGGATGGCACTGATCAAGGGGAGATGGTGACAAGAAGAGAGGGTAATGTTTATCCATGTAAAAAGTGTGAAAGAACCTTTCCTCTTGAGCAGTTACTGGTCCTTCATGAACGCAATCATTCAAGAGAGAGGAAGTTTAAGTGTTCTCGTTGTGATAAAAGTTTTTATACAAATGGGGATTTGCACAAACATGAAACAGTTCATTGGGACGATAAGCCTTTTTCATGTATCGTTTGCGGTAAGGCATTTGCACGAAAGAACTTGCTGACTCGTCACGAGAACGTACACAGGGATAAGAAACGCGTTTCTTGCAGTTACTGTTCGAAACAGTTTCTGTCCCTTGCCGAATTGACGGATCATGAGAAGAATCACAAACGAACTAGACTTTATCAATGCAAAATTTGCAAGCAGAAATTTTCTGCAAAACACTCAATGGTAAGGCATGAAAGTCGACATCAAGGCAGAGACTTGAAATTCTCCTGTGATTATTGCCGAGAAATGTTTTCTTCTCAGGCCAAGCTATCACGGCATCTAGTTACGCATGCAGGTAGTAAACCATTTCCATGCAAGTTGTGCACTAAGGCATTTTCTCTTAGTCATCATCTTACTCGGCATATGCGCAGCCATTCTGCCGAGAAACTATTTAGATGCACTTATTGCAACAAATCATTTTCGCGCCGCGAGTCCTTGGAGATCCACATTCGGAGTCATACAGGGGAACGTCCATATCCATGCAAGGTTTGCGGGAAGTGCTTCCAGTCTAATACACAGCGAACTCGGCACTCCAAGATTCATAAGGAAAGACCTTTCTTGTGTTTCCCATGTAAAAAAGCATTTCTCACTAAAGCTGAAATGGAGAAACATAACTGCAAGTCAGGTAGAATTAAAACTAAATCACCTCCAAAAGAAATATTTCCCTGTACTGTATGTAAGAGTCCTTTTAGTACGCAAGCAGAGTTAGACATGCATGCATGTGATGATGTAAAATCCATTACTTCGACCAATAGTCAGGCTGAAGGATCTTTCTTATGTGTTAAATGCAAGAAGGCCTTCAACGTTGAGTCGGATTTGGAGTGCCATACTTGTCCTAAGTCAAGTGTATTAACATCAGACGGGAAAGCTAGTTCTTCCTTATCATGTAAAACTTGTCAGGAATCATTTTCTACAAAATCTGAACTTAAAAAGCATTCAGAAATTCATAAATCTGTTGTTGAAATGGCAATAGTAAATTCAAGACGACCGTATCTCTGTGCTGAATGCAAGAAAGATTTTTGTACGAAGTCAGAGTTAGAAAAGCACTCCCTAACACACAAGTCAGTCACAGATATTACAATGGTCCAATTAGATTCATTCCTATGTAATGATTGTAAAGTAACCTTTCGAACAAAATCGGAACTTGAAAACCATCCTTGTAATAATTCTAGTTAA
- Protein Sequence
- MICEENWNHAPSEMEDLNCESQDLSGQDAVEETFIIGLDPSLPQCSSSYTDEEVEDDDSDDYDYPMVRTRRTRKKSKYNTNNKQDEDESFIVSLDPSELLSDGTDQGEMVTRREGNVYPCKKCERTFPLEQLLVLHERNHSRERKFKCSRCDKSFYTNGDLHKHETVHWDDKPFSCIVCGKAFARKNLLTRHENVHRDKKRVSCSYCSKQFLSLAELTDHEKNHKRTRLYQCKICKQKFSAKHSMVRHESRHQGRDLKFSCDYCREMFSSQAKLSRHLVTHAGSKPFPCKLCTKAFSLSHHLTRHMRSHSAEKLFRCTYCNKSFSRRESLEIHIRSHTGERPYPCKVCGKCFQSNTQRTRHSKIHKERPFLCFPCKKAFLTKAEMEKHNCKSGRIKTKSPPKEIFPCTVCKSPFSTQAELDMHACDDVKSITSTNSQAEGSFLCVKCKKAFNVESDLECHTCPKSSVLTSDGKASSSLSCKTCQESFSTKSELKKHSEIHKSVVEMAIVNSRRPYLCAECKKDFCTKSELEKHSLTHKSVTDITMVQLDSFLCNDCKVTFRTKSELENHPCNNSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -