Bger003441.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000723.1:329748-348324[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0014 0.08 14.1 3.3 1 23 209 231 209 231 0.98 2 15 0.0019 0.11 13.6 4.3 1 23 237 259 237 259 0.97 3 15 3.3e-05 0.0019 19.1 0.1 1 23 265 287 265 287 0.98 4 15 0.00079 0.046 14.8 0.6 1 23 293 315 293 315 0.98 5 15 7.2e-06 0.00041 21.3 1.9 1 23 321 343 321 343 0.99 6 15 0.002 0.12 13.5 0.1 1 23 349 371 349 371 0.97 7 15 3.1e-07 1.8e-05 25.6 2.1 1 23 377 399 377 399 0.98 8 15 0.024 1.4 10.2 1.9 1 23 405 427 405 427 0.94 9 15 0.14 7.9 7.8 3.8 1 23 433 455 433 455 0.97 10 15 0.00033 0.019 16.0 3.3 1 23 460 482 460 482 0.96 11 15 0.045 2.6 9.3 3.1 1 23 488 510 488 510 0.93 12 15 0.0015 0.087 13.9 1.3 1 19 516 534 516 538 0.93 13 15 1.1e-05 0.00064 20.7 1.1 1 23 544 566 544 566 0.97 14 15 0.00034 0.019 16.0 1.1 1 23 572 594 572 594 0.97 15 15 0.0004 0.023 15.8 2.3 1 19 600 618 600 622 0.92
Sequence Information
- Coding Sequence
- ATGGACAATCATCTACGAAATCGAAGCATTCTACATCTACACTtctacagtttatatattttgaggctattatgtatggcaaagacaacatTATTTCCTTTGAAgataaaaatcaagaaacttcATACAACTTCAGGaagAATGGCTGTTGTGAAAACTGAACCAGGTCTGACAGAAGAGATCTACAACAATTCCACTCAGGAACAATCCATCCAATTTGACGATGAAGAACAAAGGAACATGACTATTGAGGAGGAAGAATTCCAAATAAAGGACGAAATTGACATCAAGGAAGAAGTAGACCCTGTTCCAATCACTTTTCCTGTCTTGAGAGAAGATTTAAAGGTGACTGTGGTCTTAGCTTTCATAAATAAAAAAAGACTTGGCTTATCTggagaaattaaattgaaaactgaaaatgatgatgatggagAAGATCGTCAAAAGGACAAACAATCTCTTATACAAAAGGGAGATTTAAAGCAAAGAAGAAACATCATTAAACAAGAATATGTGGAATGTTTATTTTCACGGAGCAAAAACGAAGCGAAATTcccaaagaaaaagaagaaaagaaagaatgtTGGAAAGAAACAAAAGAAACCCAACATCACTGTGAAATGCTTCAAATGTGAAGAATGTGGGAAATTATGTTTATCAAATTCATCGTTGAAGAGGCATTTTCGAGTGCATAGTGGAGAAAAACCTTATCACTGTACAAGCTGTGATAAGAATTTCAGTCAcgttgaaacattaaaaattcatGAACGGCTGCACACTGGCGAGAGACCATACAAATGTGATATATGTGGAAAGGCATTTGTTAACAATGGAATTTTAGTGGAACATAGACGTATTCACACAGGCGAGAAACCTTACATGTGTGATTTATGCCCATCTAAATTTTCTGGGAGAAATGGACTGAAAAATCATAGGCGTATTCACACAGGTGAAAAACCATACAAATGTGACTTATGTGAAAAATCATTTATTCAGACTGGCCATCTTACAGTTCATAAAAGAGTTCATTCAGGTGAAAAACCATTTTCATGCGATGCATGTGGTGCTAAATTTTCTAGTAAGGATTTAGTTGCGAAACACTATATAATTCATACTGGATTAAGACCTTTTACTTGTAAGGAATGTGGCAAAAGTTTTTCAAGAAGAACTCAGTTAAATTTGCACTCTAGAATTCATGGTGGTGAGAAAAAATACAGCTGTGATATATGCAAGAAAATCTTCCTTTTTCAACAAAGCCTTCGAAAGCATTCATTTatacatttgaaaacaaaaccATTTAGTTGTGAGCTATGTGACATGAAATTCTCATTTGCTGAATCCtgtaggaaacattttaaagTTCATTTAGGTATAAAATATCATTGTCTCATTTGCGACAAAGAATTTTCTAATGAGAAGTCTCTCAAACAGCATCATGGGATTCATACGGGCGACAGACCATTTAAATGTCGCCACTGTAGCAAAGGCTTTCTGAGGAGAGAAAGTCTTAGAATCCACGAGTACGAACATGCAAGCAAAAAGCCATATACCTGCGATGTATGTAACCAAACATTTACACGGAAATCTGCAATTGAAATACATTGTACTGCTCATTTAGGGATAAAACCTTATACATGCAAGATTTGTAAGAAGGGTTTCACAAGACCGGGTGGTTTAAATACTCATAAGTTCATGCACACAGGCGATAAACCTTTTGCTTGTGATCGCTGCGATAAGAAGTTCCTGACCAAAAGCCTTCTTGCCAAACATTACCGTGCCCATACTGGTGATAAACCTTTTCAGTGCGATATTTGTGGTAAGAAATTTGCACTCAAAGAATCACTCAGAACTCATTGTTACATTCATattaaaaagaagataaaaagTTGA
- Protein Sequence
- MDNHLRNRSILHLHFYSLYILRLLCMAKTTLFPLKIKIKKLHTTSGRMAVVKTEPGLTEEIYNNSTQEQSIQFDDEEQRNMTIEEEEFQIKDEIDIKEEVDPVPITFPVLREDLKVTVVLAFINKKRLGLSGEIKLKTENDDDGEDRQKDKQSLIQKGDLKQRRNIIKQEYVECLFSRSKNEAKFPKKKKKRKNVGKKQKKPNITVKCFKCEECGKLCLSNSSLKRHFRVHSGEKPYHCTSCDKNFSHVETLKIHERLHTGERPYKCDICGKAFVNNGILVEHRRIHTGEKPYMCDLCPSKFSGRNGLKNHRRIHTGEKPYKCDLCEKSFIQTGHLTVHKRVHSGEKPFSCDACGAKFSSKDLVAKHYIIHTGLRPFTCKECGKSFSRRTQLNLHSRIHGGEKKYSCDICKKIFLFQQSLRKHSFIHLKTKPFSCELCDMKFSFAESCRKHFKVHLGIKYHCLICDKEFSNEKSLKQHHGIHTGDRPFKCRHCSKGFLRRESLRIHEYEHASKKPYTCDVCNQTFTRKSAIEIHCTAHLGIKPYTCKICKKGFTRPGGLNTHKFMHTGDKPFACDRCDKKFLTKSLLAKHYRAHTGDKPFQCDICGKKFALKESLRTHCYIHIKKKIKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -