Basic Information

Insect: Blattella germanica
Gene Symbol: -
Assembly: GCA_003018175.1
Location: PYGN01000433.1:289302-300531[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.3 4.2e+02 2.3 0.8 1 19 44 62 44 65 0.87

2 13 0.00015 0.0084 17.1 4.8 1 23 835 857 835 858 0.95

3 13 0.00019 0.011 16.8 0.5 1 23 864 886 864 886 0.97

4 13 2.5e-06 0.00014 22.7 0.4 1 23 892 914 892 914 0.99

5 13 0.042 2.4 9.4 5.0 1 23 920 942 920 942 0.98

6 13 4e-07 2.3e-05 25.2 1.3 1 22 948 969 948 969 0.96

7 13 0.00015 0.0086 17.1 0.9 1 23 976 999 976 999 0.96

8 13 1.8e-05 0.001 20.0 1.0 1 23 1005 1027 1005 1027 0.99

9 13 8.5e-06 0.00049 21.0 3.5 1 23 1033 1055 1033 1055 0.97

10 13 0.00028 0.016 16.2 0.2 1 23 1061 1083 1061 1083 0.98

11 13 0.00027 0.016 16.3 3.2 1 23 1089 1111 1089 1111 0.98

12 13 5.4e-05 0.0031 18.5 2.1 1 23 1118 1138 1118 1138 0.99

13 13 1.4e-06 8.1e-05 23.5 0.9 1 23 1144 1167 1144 1167 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.3	4.2e+02	2.3	0.8	1	19	44	62	44	65	0.87
2	13	0.00015	0.0084	17.1	4.8	1	23	835	857	835	858	0.95
3	13	0.00019	0.011	16.8	0.5	1	23	864	886	864	886	0.97
4	13	2.5e-06	0.00014	22.7	0.4	1	23	892	914	892	914	0.99
5	13	0.042	2.4	9.4	5.0	1	23	920	942	920	942	0.98
6	13	4e-07	2.3e-05	25.2	1.3	1	22	948	969	948	969	0.96
7	13	0.00015	0.0086	17.1	0.9	1	23	976	999	976	999	0.96
8	13	1.8e-05	0.001	20.0	1.0	1	23	1005	1027	1005	1027	0.99
9	13	8.5e-06	0.00049	21.0	3.5	1	23	1033	1055	1033	1055	0.97
10	13	0.00028	0.016	16.2	0.2	1	23	1061	1083	1061	1083	0.98
11	13	0.00027	0.016	16.3	3.2	1	23	1089	1111	1089	1111	0.98
12	13	5.4e-05	0.0031	18.5	2.1	1	23	1118	1138	1118	1138	0.99
13	13	1.4e-06	8.1e-05	23.5	0.9	1	23	1144	1167	1144	1167	0.97

Sequence Information

Coding Sequence: ATGCAAACATTAGACAAACACTCAGGAGATAAATTGGTATTTCAAGAGCCTTCTACAAAAATTAAGGGATTTAGGTTTTACCAAGAAACTGTATGTGGTTTTAACAATTGTATAAATACCACAGCTCATTATCATTGTCAGACTTGTGGTTATGGTACAAGCGAGTTACCACATGTGATGTCTCACAAAACTAATTGTTCAGGATGTGTTGCTGATTCTAACTACAGTAGGAATTTTACGTCAGGTTCACGTTCACAACTACTGGCTGTACAAAATGCTGCTAATAGTACACAGTTAGTGGAACGATCACAAATATATTCTTCTCCGTACGGAGTGGAATCAGATTCTTCTGCAATGTCCGGGAACATCGGACAAACCTCAACTTCACAATCAAACACCATTACTAGTTCTGGAGGACATTATTTTCATAGATCATTGCAACAATCGCCTGTTTTCAATCCCCTGCTTTCAAGCCAAGGACAAAGTCTCTATAATGGTGTTTATGGCACACAGAGTGGTTATGTAACACAAAATTCATTCTCttcaacaaattttaataattatggtCATGTAGAACCACCTTGGATTTCAGACACTCGTGTTACAAACACTGTTAATAATTCTTTGCAACAAATAGAAGGTGACAGAAATAGTAGGCATCAGTATGGAGATAAGAATTTGCCATGTAATGCCCAAAATTTATCTCACACTTGTTGTGGGAACAGATTAGGAATTggtgaaaatattaatatgtgtTCACCCATGCCTACTGAAGCATTTAGAAATATGAATAAAGAATTAGTAAATCTTCAGTCTAAGAATAATTCTGCTTTAGATTCACAAGGATGGTTCTGTGGCCAAGGAATATTGGGTTATGGAAATCAGCAAAATCAAAATTCTCAGCAGACTAACTATAAATGTGGTGAACAGTTTCCATCATGCTCTGTTTCCCAAATTAACATGTTACTTCAAGAGCAGACAGGTTTGAAAAATTCTTCAGATTCAAGTATGACTAATTCTTGTTATGACCACTCACAGAGTCATAGTTCTAATTCAAATAAACAAATTGAACATTGTTCTAATAATGGTGGTAGCAACAATCATAACAATAATTCCATTAAATCAGTTTGTATGGAACAAAACAAAGATCAAGCAATGAAATACTGCAATCTTCAAAAACCTCAGGAGTCAGGACAACCTGTGAATCATATGACATTACAAATGCAGCAGAAACAAAATCAGGAACAAAACAATTATGCAAACCATACTTCAATGTATGGCGCCACAGGTGAACTCCATGATGACGCTTTGTACTCACAAGCTTCACTAATTCTCCACATGGGAAATGATGTTTCACATAATGGTGGACGATTTCAGCCACCCTTTATTTCTTCCAAACATAGTCAAAcgcaaaataatataaacaacataaataaaCCTTATACAGTTTCACCTGTTTTGCAGCATATTCAAGAACATGGTAGATGTAGTTTAGATCAAAGTATGTCTTGTGAAGTTGTGGAGAGTTGTCTCCAATCTGACATGAAAACTGTAAATGAGAATTCAACAAACTTGCCAAATGCAAGTTCTGCTAGCAACAGCTGCTGTCAGTTACCTGTTGAATCTACAAACAGCATGAGTAATGAAAATCAGGCCATATTTGGAGCTCATTTGCAATCACAGAGACTACCAAATTGTAATGCTAGTGACAACATGCAGATATGTTCAAATACATCATCATCTCAAACACTTCAGATTGAATGTGGCGAAGCTGATGGCAAAGAAGAATCATCCAGTGTTGCTGGAGAGAGTGATATCATTGTTGAAGAGACAGAGGAGGAGCTGACGGAAAGTGAGATTTCTATTGAGGAAATGAAAGGAACCGTCTTCAGAGAAGAATCAGCAAGGTGTCTGGTGTGCAGCACATCATCTAGTCCTCAGACACCAGAAAATCAATTTGTACACATGCGTGGGGATTCTCCAGTAACAACTGCTTCTCATGTTCCTGTAGTAACCAAACTAGCCCAAGTAGTAGCAGATAATCAGTCACAAATACTAAAATTACACAATGAATTTATATGCAGGAGATGTTTCAACTTGATAGATACTGTAGATTGTTTAGAGACAAAGTTAGCGGCTGCAAAGCATGATTTAATACAGCTATTTGAAACtcgtttaatttcaattaaagcATTGGAAAATTGGAAAGTTTCCCAAGATATTACTGAGAAGGTTGTGGAGGATTCTGAAAACAATGTAGATGACTCTGTTTCAAAATGCACTTCAGAAcaaattacagaaagtgatttAGATGAGACTGATAAATGCaatgaaactgaaaatttggtCGAGGATACATCTGTTAACAAAATTTCGGAAGACTTAGAAGTGAAAGTTAGTACAGATAAATGCATTGAAGAAGATGTGAAGATCCAGGAATCTGTttgtttggaagatgatgatggtggtgatgatgctCCAACTGAATCCATATCTAATAAGTACAACTGTGATATTTGCACTAAACCTTTTTCTAGTAAAGAATATCTAAATAAACATCATCTTCAGCATCACACTAAACAGTTTAGCTTCTATTGTGATCGTTGTGGAAAAGGTTTCACTCTTAAACGTGCACTAGAAAACCATTTACTTTTGCATAGTGGAGAATTTCGTTACCAATGTGAAATCTGTGGGAAAATGTTCATACAGAACTATTCATTGGATGAACATCTACAAAAACACCAGGGTCGATTCCGTCATAAGTGTCAATTATGCGAGAAAGGTTTCATGTGTAAGAATACACTTCTTGCTCATATGCGAACTCATACTGGAGAACGTCCTTTTGTTTGTCACCATTGTGGAAAAAGATTTAGTTTCAGTTCAAATCTGTTAGCTCATATTAGAGTTTGTGGGGGAGACACACCATTTAACTGCAATCAATGTGATAAAAAGTTTGCTCTTGAAAAGCAGCTTAAAGCCCATATACTTTCAAAGCATGAAGGACAATATCGGTTCAAATGTACAATCTGTGGTAAAGGTTTTACAAAAGATTCAGATCGGAAGGTTCATATTCGTTCTCACTCAAAAGAAAAACCACATAAATGTGAGGTTTGTGGGAAGTGTTTTAGTAGTTTGGGAAATCTGAATCAACATGCTAAACAGCATGGTGGTGAGCGGCCTTTCAAATGTTCAATTTGTGGACAAGGCTTCTTGCGGCGTGGCTCTCTCACTGGTCATATGAATATACATGCTGGTGTTAAACCATATAGTTGTGACCAGTGCAGTAAAACATTTTCAGCCAAAAGGAATCTTCATGCCCATCGGAAATGGCATTCTGGTACAATAAAACGTTACACTTGTACAATTTGTGGAAAATCATTCAATCATGGTTTGCAGGTTCACATGAGGACTCATTCAGGTATTAAACCATATTCATGCTCAGATTGTGGTGTATCCTTCACAGTTAGGAGTTCCTTAAATAAGCATATCAAAAGTAAACATCAGAAGAGTGTAAAATTTGAAAAGCATtcctaa
Protein Sequence: MQTLDKHSGDKLVFQEPSTKIKGFRFYQETVCGFNNCINTTAHYHCQTCGYGTSELPHVMSHKTNCSGCVADSNYSRNFTSGSRSQLLAVQNAANSTQLVERSQIYSSPYGVESDSSAMSGNIGQTSTSQSNTITSSGGHYFHRSLQQSPVFNPLLSSQGQSLYNGVYGTQSGYVTQNSFSSTNFNNYGHVEPPWISDTRVTNTVNNSLQQIEGDRNSRHQYGDKNLPCNAQNLSHTCCGNRLGIGENINMCSPMPTEAFRNMNKELVNLQSKNNSALDSQGWFCGQGILGYGNQQNQNSQQTNYKCGEQFPSCSVSQINMLLQEQTGLKNSSDSSMTNSCYDHSQSHSSNSNKQIEHCSNNGGSNNHNNNSIKSVCMEQNKDQAMKYCNLQKPQESGQPVNHMTLQMQQKQNQEQNNYANHTSMYGATGELHDDALYSQASLILHMGNDVSHNGGRFQPPFISSKHSQTQNNINNINKPYTVSPVLQHIQEHGRCSLDQSMSCEVVESCLQSDMKTVNENSTNLPNASSASNSCCQLPVESTNSMSNENQAIFGAHLQSQRLPNCNASDNMQICSNTSSSQTLQIECGEADGKEESSSVAGESDIIVEETEEELTESEISIEEMKGTVFREESARCLVCSTSSSPQTPENQFVHMRGDSPVTTASHVPVVTKLAQVVADNQSQILKLHNEFICRRCFNLIDTVDCLETKLAAAKHDLIQLFETRLISIKALENWKVSQDITEKVVEDSENNVDDSVSKCTSEQITESDLDETDKCNETENLVEDTSVNKISEDLEVKVSTDKCIEEDVKIQESVCLEDDDGGDDAPTESISNKYNCDICTKPFSSKEYLNKHHLQHHTKQFSFYCDRCGKGFTLKRALENHLLLHSGEFRYQCEICGKMFIQNYSLDEHLQKHQGRFRHKCQLCEKGFMCKNTLLAHMRTHTGERPFVCHHCGKRFSFSSNLLAHIRVCGGDTPFNCNQCDKKFALEKQLKAHILSKHEGQYRFKCTICGKGFTKDSDRKVHIRSHSKEKPHKCEVCGKCFSSLGNLNQHAKQHGGERPFKCSICGQGFLRRGSLTGHMNIHAGVKPYSCDQCSKTFSAKRNLHAHRKWHSGTIKRYTCTICGKSFNHGLQVHMRTHSGIKPYSCSDCGVSFTVRSSLNKHIKSKHQKSVKFEKHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -