Bger026361.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000118.1:1934332-1969101[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0011 0.062 14.4 1.0 1 23 162 185 162 185 0.97 2 14 0.053 3 9.1 1.1 5 23 210 228 208 229 0.92 3 14 9.4e-05 0.0054 17.7 1.4 3 23 236 256 235 256 0.97 4 14 0.046 2.7 9.3 1.2 1 23 262 285 262 285 0.95 5 14 0.0011 0.063 14.4 2.0 2 23 292 313 291 313 0.97 6 14 7.6e-05 0.0044 18.0 0.3 3 23 321 341 320 341 0.98 7 14 6.8e-06 0.00039 21.3 2.4 2 23 348 369 347 369 0.96 8 14 6.8e-05 0.0039 18.2 0.5 1 23 375 397 375 397 0.98 9 14 3.4e-05 0.002 19.1 1.2 1 23 403 425 403 425 0.98 10 14 0.098 5.6 8.2 1.1 1 23 437 459 437 459 0.96 11 14 0.00054 0.031 15.3 0.1 1 23 466 488 466 488 0.97 12 14 5e-06 0.00029 21.7 1.5 1 23 494 516 494 516 0.95 13 14 4.5e-06 0.00026 21.9 1.1 1 23 522 544 522 544 0.98 14 14 8.6e-06 0.0005 21.0 1.4 1 23 550 572 550 572 0.98
Sequence Information
- Coding Sequence
- ATGGATTTCGGATTCCAGCCTTATACAagagatggaaaaataatcttttgtctggtctgcaataaagagGGTGATAATGAAAACCCACAGCCTGCTGTTCATGATTCAGGAAATTCTTGTTTGTCTCCGGCACTTGCAGAATTTCTTGCAGTACGAGATGAAAGCTCACATCATCCTCCATTGAGAAACACCATAAACCAGAAATGCAGCGAAGCGTATATAGTCAAAAGATATCTTCCTAATCAGAATCAATTCTCAAAAAATATTGACAGTCATAATTCTGAGTATGAAGGACAACATGCTCAGTGTGAGGCCTCAAGTGAAATTAGGTTAGAAATGTTAGAAGATACCTGTGATATGTCAAATCCATCGAGTGCAGTGCTAACAGATTCTGAACTCCCTTTGAATATCAAGATTGAAGAATCGTGGACTGAAGATATGGAATGTAATACAGTAGAAGACTCATTAAAGGATTTAAAACTTTATCAGTGTCAAAAATGTAAGATGGTATTTAGTGaaagaaataaactttttattcatgaaataacagaacatatttttaaagaaaagaatGAGAAAAAGTTGccattattgcaaaaaaaatataggAGAGAAAAGGTTACTTGTAAATGTGGGCAAATATTCTCTGGGAAGAAGCCTCTCAGACGTCACATAATAGACCACCATATTCCAGTTGAAAATATCTGTGAATATTGTGGAGCccactataaaaaaaaaagtcaacttGAAGTTCACAGAAGGCTTCACACTGATGAGAAGGCATTTGCTTGTGAAACTTGCAATGCTAGTTTTCTTTTTAAGAAAGAATTACTGCGGCACAAGCGATTAAGCCATAGTATCATAAAATCGCTTACATGTTCTGTGTGTAATAAAACTTGTCCTAATAGAAATGCAATGTGGCGGCATGAGAAAACACACACTGATGAAAGAAATGTTTTATGTTATTTGTGTGGAAAGGTACTGTCGAATCCTCAGAGTATGCGAGTTCATATGCGAACTCATTCAAGTGACAGACCATGTTCCTGCCCTACTTGTGGGAAGAGTTTCAAAGACAACACTTCTGTTTCAAAGCATATGTTAATGCATTCTGCTTCAAAAAATTTCACTTGCGATATTTGCGGAAGAGCATTTTATAGTAAAGCTTTAGTAAAGCAACATAAACTTAGTCATTCAGGTGTTAAACctcataaatgtgatatatgtggAGCAGCTTATAATAGATTGGGAAATTTgaaccaacataaaaaaaaacattcatcaAATCCACATCCCATAGAAAACCTGTCCCATGAGTGTGTTGTGTGTGGTAAGAGAATGCGTTCTGAACTGACCCTCAAATATCACTTAGCAAAGCATACCGGAGAAAAAAAACCATTTGACTGTGAAGTTTGTGGTAAAAGATTTATCGCAGTAGATCCCTATCGTGTGCATATGCGGATACATACAGGAGAGCGCCCTTATCAGTGCACAACATGTGGTAAAACATTCCGGAGTTCATTTACTTTGAAACAACATGCTGCACTTCATAGAGATGAATGTCCATATGCTTGCCCTTAttgtgaaagaaaatttaaaCGACTTCAGTCCTTGATTGTACATAAGCGAACTCATACTGGAGAAAAACCACACCGATGTCCTTTCTGTGGACGTGCATTTGCACAAAAAGGTGATATGGTGAAACATACTAAAACACACAGTCGTGACAGGCAAGTGATTGCTAATAAAATTAAAGAGGATGGTGTAGTGATGGAAATAGAACATATTTCAGAAGAACATATTTCTGAGTTAGCATTAAGTGATTCTGAGATCACAAGTGAATTCCTTATTGACATGCCTATAGTGGAAGTAGAAACTGAAATTCACTCTGAAATCCAGCCAAACATTCATCCAGAAATATCAGCTGAAATTAACTCTAAAATAGcatag
- Protein Sequence
- MDFGFQPYTRDGKIIFCLVCNKEGDNENPQPAVHDSGNSCLSPALAEFLAVRDESSHHPPLRNTINQKCSEAYIVKRYLPNQNQFSKNIDSHNSEYEGQHAQCEASSEIRLEMLEDTCDMSNPSSAVLTDSELPLNIKIEESWTEDMECNTVEDSLKDLKLYQCQKCKMVFSERNKLFIHEITEHIFKEKNEKKLPLLQKKYRREKVTCKCGQIFSGKKPLRRHIIDHHIPVENICEYCGAHYKKKSQLEVHRRLHTDEKAFACETCNASFLFKKELLRHKRLSHSIIKSLTCSVCNKTCPNRNAMWRHEKTHTDERNVLCYLCGKVLSNPQSMRVHMRTHSSDRPCSCPTCGKSFKDNTSVSKHMLMHSASKNFTCDICGRAFYSKALVKQHKLSHSGVKPHKCDICGAAYNRLGNLNQHKKKHSSNPHPIENLSHECVVCGKRMRSELTLKYHLAKHTGEKKPFDCEVCGKRFIAVDPYRVHMRIHTGERPYQCTTCGKTFRSSFTLKQHAALHRDECPYACPYCERKFKRLQSLIVHKRTHTGEKPHRCPFCGRAFAQKGDMVKHTKTHSRDRQVIANKIKEDGVVMEIEHISEEHISELALSDSEITSEFLIDMPIVEVETEIHSEIQPNIHPEISAEINSKIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -