Bger011522.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000984.1:572250-600797[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0002 0.011 16.7 0.1 1 20 116 135 116 136 0.95 2 13 0.0063 0.36 12.0 2.1 1 20 144 163 144 166 0.94 3 13 2.6e-06 0.00015 22.7 0.7 1 23 172 194 172 194 0.98 4 13 6.1e-05 0.0035 18.3 1.8 1 23 367 389 367 389 0.97 5 13 0.024 1.4 10.2 0.1 2 22 398 418 397 418 0.93 6 13 0.00017 0.01 16.9 3.1 1 20 463 482 463 485 0.93 7 13 0.0026 0.15 13.2 0.1 1 23 490 513 490 513 0.96 8 13 3.8e-06 0.00022 22.1 0.1 1 23 519 541 519 541 0.98 9 13 0.005 0.29 12.3 2.2 1 23 552 574 552 574 0.95 10 13 0.00048 0.028 15.5 0.3 3 23 582 602 580 602 0.97 11 13 0.00033 0.019 16.0 0.1 1 23 608 631 608 631 0.96 12 13 0.0042 0.24 12.6 0.2 3 23 639 659 639 659 0.98 13 13 7.5e-05 0.0043 18.0 0.1 1 23 724 746 724 746 0.98
Sequence Information
- Coding Sequence
- ATGAATACTGAAATAGAATCAATAAATACAATAGAACCAGaagaaaatattcaaaatgaGATAGGCCTAATACATGGGAATGATGAGGGTTATCAAAATACTTTGGATGTGCCATTTCAATGTAAGTTGGAAGTTCTCAGTGAGTGTGAAGATGAACAGGATTCTATGGCTAATCAGAAGTTGAACGAAATTCCAGTTAAAGAGGAAAATGTTGATCCTAAGGAGACCACTGAAGATGAAAGCATGGCAGTTGAAGCATTGAGACAGTTGGGTGGTATGTTCCAAAATGTACCAGATACTTTACCTCCACCTGCAGCTGTGACTACTATAATACCATTCCGTCAACATGTCTGCAACATCTGTGGGGAGACTTTCGAACGCAAGACTGACCTTGGGAATCATATTGTTTGTCATCAAGTAGATCGTCCACATGCATGCAgGATTTGTGGCAACTTATTCAGAAGAAAAGCAGATCTGCAGAACCATATGGTATGTCATCAAGTAGAGAGACCACATCGATGTCCTCAGTGTGGAGCAGATTTTCAAAGACCCTCTAGCCTTACCAACCACATGAAGATCCATACATACTCTCCAGGTCGAGCTCTAGTATCAACAAATTCAACTCTAAACTCTCAAAATTTTACCACAGCAAATAGTATTACTACTGCCACAACAACAACAGTGAATGAAACACAAGGTGCACAAATACCATCGTACAATGGCTGGAatgtaaattattcaaataacatAATTCAGTGTAGCTCTTTCCAAGCAAATTCATCAAAAGAGAATACAACCAATGAATTTGGATACCAAGAGAATTCTGGACCAGTAATTAATGCCATTGAGTCTTTGCAAAATCCACAGTGTAGTATCTCTGTAGAGTCACCATCAGAAGTCCAAAATGCCAATAATTATGAAacagtaatacaaataaataatagtgatgataatactaacacaaattttaactCAGAAAGATGTAGAGAATTAAATGTTAAAGTAGAAGGGATTCCATATGATTCCAAGATAGAGAATTCTTATGTTGGTCCAACTTCTGGTCAGATAAAGCCATCTGATGATGCAGGCCGTCGCCCACATGTTTGTCGTCATTGTGGTCTTGCATTTTCAAGAAGTAAAGCTCTGGAATCACATGCACGATTACATCAGGATAATTGGGGTAGTCCTGTAGAATGTGACAGGTGTGAGGAAATGTTTCCAGAAGAAGATTCTTTACGCCATCACCAAGAGACATGCATTGGTCGAGTTCTTAATTGTCAACAGCAGCCTCCACCACAAACACAGCAGCAAATTATGCAGAATAAGCAAGAACAAGAAACAAGATTAGAACCAACAAATTCTATGCAAATGGCTAAAGTGGGCAAACATTCTTGTTCAGAATGTGAGAAGAGATTTACTACAAAACAAAAACTTTTCAGACATATGTGGATTCATCGCAAACGTCCCTTTGTATGTGAAGTTTGTGGTATGAGCCTCACAGATCGAACAGCACTTGATGAACATCGCCGAGATCAACACCCTGGTGACACACCATTTACCTGTAATGAATGTGGTAAAAGCTTTGCAAGTCGACAAGGTTTATGGGAACATGGACGAGTGCATGCTGGTAGTGGAGTACCAAATACTTCTCCATTCCTTTGTCAAAGATGTGGAAAATCATTTGCAAGTCGTCAAGGTCATCTAATTCATATGCGTACACATACTGGAGAACGGCCTTATGGTTGTCGTTATTGTTGGAAAGCTTTTAGAGATGGTGGAACTCTTCGTAAACATGAACGTattcacactggtgaacgtcctcATGTTTGTCCCCTTTGTCCACGTGCTTTCAATCAGAAAGTGGTTCTACGAGAACATGTAAGATGGGTACATGCTGCAAGGAACTCTGATGGTTGTCAACTTTGTGGTTATGTTGTAAGTGATAGAGAAGCCCTCTGTGCACATATAGTGAAACATAGTGACCAGCTTGCAGCTGCAGCGAAAGCAGCCAAAGGAAAACAGGCTCAGGACTCCTTAAAGGGAAGTATTCCACAAGAAATTGTGACTGTAGATCCATACCCTAGCCCCagtcataattataattatgcaaGAAATGAAACATCTGATACAAACATGAATGCTAATGTTATGCCGGAAATAAAAACTGATTATTCCTGTGATATGTGTGGAGAAGCATTTAAAATAAGAACTGAACTTGTAAATCATGTTCGTATACATATCTAA
- Protein Sequence
- MNTEIESINTIEPEENIQNEIGLIHGNDEGYQNTLDVPFQCKLEVLSECEDEQDSMANQKLNEIPVKEENVDPKETTEDESMAVEALRQLGGMFQNVPDTLPPPAAVTTIIPFRQHVCNICGETFERKTDLGNHIVCHQVDRPHACRICGNLFRRKADLQNHMVCHQVERPHRCPQCGADFQRPSSLTNHMKIHTYSPGRALVSTNSTLNSQNFTTANSITTATTTTVNETQGAQIPSYNGWNVNYSNNIIQCSSFQANSSKENTTNEFGYQENSGPVINAIESLQNPQCSISVESPSEVQNANNYETVIQINNSDDNTNTNFNSERCRELNVKVEGIPYDSKIENSYVGPTSGQIKPSDDAGRRPHVCRHCGLAFSRSKALESHARLHQDNWGSPVECDRCEEMFPEEDSLRHHQETCIGRVLNCQQQPPPQTQQQIMQNKQEQETRLEPTNSMQMAKVGKHSCSECEKRFTTKQKLFRHMWIHRKRPFVCEVCGMSLTDRTALDEHRRDQHPGDTPFTCNECGKSFASRQGLWEHGRVHAGSGVPNTSPFLCQRCGKSFASRQGHLIHMRTHTGERPYGCRYCWKAFRDGGTLRKHERIHTGERPHVCPLCPRAFNQKVVLREHVRWVHAARNSDGCQLCGYVVSDREALCAHIVKHSDQLAAAAKAAKGKQAQDSLKGSIPQEIVTVDPYPSPSHNYNYARNETSDTNMNANVMPEIKTDYSCDMCGEAFKIRTELVNHVRIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -