Basic Information

Insect: Blattella germanica
Gene Symbol: -
Assembly: GCA_003018175.1
Location: PYGN01000683.1:40875-64567[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5 2.9e+02 2.9 0.2 2 12 474 484 474 492 0.88

2 16 9.5 5.5e+02 2.0 5.0 1 19 501 519 501 523 0.90

3 16 0.23 13 7.1 0.8 2 19 539 556 538 558 0.92

4 16 0.00066 0.038 15.1 1.4 1 23 565 587 565 587 0.97

5 16 1.3e-05 0.00077 20.4 0.5 3 23 595 616 593 616 0.95

6 16 7.2e-05 0.0042 18.1 1.3 1 23 622 644 622 644 0.98

7 16 0.0012 0.071 14.2 0.1 1 23 650 672 650 672 0.97

8 16 3e-05 0.0017 19.3 3.3 1 23 678 700 678 700 0.97

9 16 0.78 45 5.4 0.2 1 23 710 734 710 734 0.92

10 16 7.8e-07 4.5e-05 24.3 0.5 1 23 752 774 752 774 0.98

11 16 3.2e-05 0.0018 19.2 2.6 1 23 780 802 780 802 0.97

12 16 1.3e-05 0.00076 20.4 1.0 3 23 810 830 808 830 0.98

13 16 0.0015 0.084 14.0 0.3 1 23 836 858 836 858 0.98

14 16 5.1e-05 0.0029 18.6 2.3 1 20 864 883 864 886 0.94

15 16 9.7e-08 5.6e-06 27.1 0.2 1 23 892 914 892 914 0.98

16 16 7.6e-05 0.0044 18.0 1.7 1 23 920 942 920 942 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5	2.9e+02	2.9	0.2	2	12	474	484	474	492	0.88
2	16	9.5	5.5e+02	2.0	5.0	1	19	501	519	501	523	0.90
3	16	0.23	13	7.1	0.8	2	19	539	556	538	558	0.92
4	16	0.00066	0.038	15.1	1.4	1	23	565	587	565	587	0.97
5	16	1.3e-05	0.00077	20.4	0.5	3	23	595	616	593	616	0.95
6	16	7.2e-05	0.0042	18.1	1.3	1	23	622	644	622	644	0.98
7	16	0.0012	0.071	14.2	0.1	1	23	650	672	650	672	0.97
8	16	3e-05	0.0017	19.3	3.3	1	23	678	700	678	700	0.97
9	16	0.78	45	5.4	0.2	1	23	710	734	710	734	0.92
10	16	7.8e-07	4.5e-05	24.3	0.5	1	23	752	774	752	774	0.98
11	16	3.2e-05	0.0018	19.2	2.6	1	23	780	802	780	802	0.97
12	16	1.3e-05	0.00076	20.4	1.0	3	23	810	830	808	830	0.98
13	16	0.0015	0.084	14.0	0.3	1	23	836	858	836	858	0.98
14	16	5.1e-05	0.0029	18.6	2.3	1	20	864	883	864	886	0.94
15	16	9.7e-08	5.6e-06	27.1	0.2	1	23	892	914	892	914	0.98
16	16	7.6e-05	0.0044	18.0	1.7	1	23	920	942	920	942	0.97

Sequence Information

Coding Sequence: atgaAAATTGTTTTGAAGAATGTAACTGGCGAGAGCATCACTATAGATGTTAAGCCAAATGATACATTCCGAGACCTTAAAAGTCGGATTCACAATGAATCTGGTGTACAACTCGATCTTGAGCAGCTGAATTTTAAAGGAAAGAAGATAACGGATGATCAGATTGTTTCTGACTACTTTTTTGATGATCTCAGCACAGGTGAAGATAATGAAGAAAACACAGTGCAGTCTTTGCTTTGCTCCGTTCCTGGATGTAATAACATCGAAGCCACCTGTCCAGATAAAgttttctttcattttccatccACTGAAGACAGGTGCAAGCATTGGTTGCTTGTCTGCAGACGTCTTGACTTGCTTGATAAGCCATATTCATTTGTCAGTGAACATTATGCAATATGTTCAGACCATTTCATAGCTAGTCAGTTCACTGATGAATCGAAGCAGACGTTGAAGAAAGCTGCAATTcctactgtatttgaatttaataatCAAGCTATTCCTGTGGAAATAATAGAAGGGGATCAAATCATTATAGAggATAACAGTGAATTACTAGTAAAGGAAGAACGCTTACAGCACCATCCTGAAACGGATGAAGAGACAGAAGGTGAAGATGTCGAAGATGATGGGTTAGTTGAGCATCCAGGTCTGCTTTGCCGATTGTGTGCTGGAACTATTGAAGAAATGGTGTATATCTTCAGCGGCTCTGGGAAAGAACAACATATTGCTGATAAGATTAACATGTGTCTACCTGTCACGGTTAGAAGTACAGATCCTCTTCCAAAACAGATTTGCATCAGTTGTGCCAACAAACTGAACATTTGCCATGAATTTGCTGAGATTTGCCTTGAAGCAGAAGCTAAACTCCGAGAACTGGATGAAAGGAAACATTTCAGATCACGtgaaatattcaatacagatgACAGTAAAGGAAATGTTGCTATCATCGCCATAAAATCAGAGCAAGATAATAAGAGCATGCAAAATGGAATAACGTACAGCGCAAATTATTTCAATGGTTCCGAGGAAGAAATGACAGTTAATCGCATCCATGAGTTGAACAGCAACGGAGAAACATGTAAAGGAAAGGGTAGTTACTGCTGCCCTCTTTGCTGCGATGGCAATATGTCAACTATTCAGAACAGTGCAGGGGAAGCTGAAAATAGTGAGGATATTGCTCTACTGAAAGAAATAGGTGCAAAAATCATTAGGAAAAATAACATGCATGGTGCCCAAACATACAGTTCAGTACATGGCATTGTTGTTCGAAATACTTCTAACCAAGATTCGAGCGATGACAGCAACGATGCATGGGATGCTGGAGCCATGGTATCTACCGAGTTGGAAATAATTCAAGAAGAAAGTAACCAATCTTTAGGGGAAGATGGTAATTTACATGCAAAAGAAGATTTTCCAACATGTCGCCTATGTGGCGAAACGTTTGCAAGCGTCGAGCTTTGTCTAGATCACGCCAAATGTCACATGGAATCAGACTTGTACCCATGTAGTCTTTGCGAACTTTGTTTCACTAGCGAATTATGCTTGGTCAGTCACTGCGAGGAACACAAAGCAGAAGAAAGAAGATTACGACCTAAAGCAACCAAGCGTTTGACTTGTCCAAATTGTCTTAGAAGATTTAACAACCCAAGGACACTTGCCGGACACAACTGTCACAGTGCAACTCGGCCTTTCAAATGTACAGAATGTGGGAAATTTTTCCGAACAGAAGCTCGACTTGAATTCCACCAGCAAGTACACGACGGAGGGAGTCCAGTAATCTGCGAACACTGCGGAAAAGAATTTAGCAGGGAAAACAATCTATTTGATCATGTGCGTTTAGTGCACATGCGTGAGAAGGCGCATCGATGCGAACAGTGTGGAAAGTCTTTCCAACTCAAAGCTCGTCTCATTGCCCACCAGCGTGTACATACCGGAGAGAGGCCTTTTGTGTGTGACATTTGTGGTGGTAAGTTTTATGACAATGCAACCCTCAAAGGTCACAGAGTCACCCATATGGACGTAAAACCTTTCCAGTGCGATAAATGTGGACGATGCTTTGCACGAAAGACATTGTTTAAGCAGCACGTCATGGCACATATGGATGAAGGAAAGAGTCCGAAGTCATATGCTTGCAAATTATGTAATGAAGCAAATTTTCCAACATATGCTAAATTGACAGAACATCGAAGGGATGTGCATCCATTGGTAAAAACATTTGACGATGATATAGCAGCTCATAATACAAAACCTTTCAAATGCGAAGATTGTGGGAAATCGTTTGCCTATCGGGTTACTTTAATAGCCCATAGACGTAATCACACTGGAGAGTTGCCGTTTGCTTGTGAATTTTGCCAGAAAAGATTTTCTCAGAAGCGTTCGCTAGTTTTACATCGTCGTACTCATACCGGTGAAAAACCATTTGGATGCGACATGTGCGGAAAGCGATTTGTACAAAGTGCACACTTGTATTCGCACATCCGTCTGCACACCGGCGAAAAACCCTACCAATGCGAAGTCTGCGGAGAAAGCTTCAGACTGAAGGATGTACGTGATGCACATCTTCGTAAGCATACTGGCGAGCGCCCCTTCAAGTGTAACGTTTGCGGGAAGGCGTTCAGAACTAGTCATTCTTATTATCAACACATGTGGATTCATCAAGGCAAAAAGCCTTATCCTTGTGAATATTGTGGAAAAGCTTTCCGTAGATCTAATGGACTCAAGATTCATATCCGCATTCACACGGGCGAAAAACCTCATTCATGTGATATTTGTGGCCGTGGTTTTGCTCAAAAACAAGACATGAAGAAACATCGAAACTTGCATGTTCAAGGGAAATTGTAA
Protein Sequence: MKIVLKNVTGESITIDVKPNDTFRDLKSRIHNESGVQLDLEQLNFKGKKITDDQIVSDYFFDDLSTGEDNEENTVQSLLCSVPGCNNIEATCPDKVFFHFPSTEDRCKHWLLVCRRLDLLDKPYSFVSEHYAICSDHFIASQFTDESKQTLKKAAIPTVFEFNNQAIPVEIIEGDQIIIEDNSELLVKEERLQHHPETDEETEGEDVEDDGLVEHPGLLCRLCAGTIEEMVYIFSGSGKEQHIADKINMCLPVTVRSTDPLPKQICISCANKLNICHEFAEICLEAEAKLRELDERKHFRSREIFNTDDSKGNVAIIAIKSEQDNKSMQNGITYSANYFNGSEEEMTVNRIHELNSNGETCKGKGSYCCPLCCDGNMSTIQNSAGEAENSEDIALLKEIGAKIIRKNNMHGAQTYSSVHGIVVRNTSNQDSSDDSNDAWDAGAMVSTELEIIQEESNQSLGEDGNLHAKEDFPTCRLCGETFASVELCLDHAKCHMESDLYPCSLCELCFTSELCLVSHCEEHKAEERRLRPKATKRLTCPNCLRRFNNPRTLAGHNCHSATRPFKCTECGKFFRTEARLEFHQQVHDGGSPVICEHCGKEFSRENNLFDHVRLVHMREKAHRCEQCGKSFQLKARLIAHQRVHTGERPFVCDICGGKFYDNATLKGHRVTHMDVKPFQCDKCGRCFARKTLFKQHVMAHMDEGKSPKSYACKLCNEANFPTYAKLTEHRRDVHPLVKTFDDDIAAHNTKPFKCEDCGKSFAYRVTLIAHRRNHTGELPFACEFCQKRFSQKRSLVLHRRTHTGEKPFGCDMCGKRFVQSAHLYSHIRLHTGEKPYQCEVCGESFRLKDVRDAHLRKHTGERPFKCNVCGKAFRTSHSYYQHMWIHQGKKPYPCEYCGKAFRRSNGLKIHIRIHTGEKPHSCDICGRGFAQKQDMKKHRNLHVQGKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00209867;
90% Identity: iTF_00209867;
80% Identity: iTF_00209867;