Bger002671.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blattella germanica
Gene Symbol
PGBD4
Assembly
GCA_003018175.1
Location
PYGN01000026.1:11529-50864[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0001 0.0058 17.6 3.4 1 23 659 681 659 681 0.97
2 11 2.1e-05 0.0012 19.8 0.2 1 23 690 712 690 712 0.97
3 11 0.0048 0.27 12.4 2.5 2 23 719 740 718 740 0.96
4 11 8.5e-06 0.00049 21.0 1.5 1 23 746 768 746 768 0.98
5 11 5.3e-08 3.1e-06 28.0 0.6 1 23 774 796 774 796 0.98
6 11 1.8e-06 0.0001 23.1 3.5 1 23 802 824 802 824 0.98
7 11 7.9e-06 0.00046 21.1 0.8 1 23 830 852 830 852 0.99
8 11 0.00028 0.016 16.3 1.8 1 23 858 880 858 880 0.98
9 11 0.001 0.058 14.5 2.8 1 19 886 904 886 908 0.94
10 11 3.1e-05 0.0018 19.2 2.1 1 23 914 936 914 936 0.98
11 11 2e-08 1.1e-06 29.3 2.5 1 23 942 964 942 964 0.99

Sequence Information

Coding Sequence
ATGAACCAAATCAGAGAAGGGCCTGATCCAAGCGAGTTCAGGCATAATGGCATTGAAACTGAACTGAACACAAAGTTTGACATAAAAGAAGAACTAGATAATGAATTTGAATGTCAATACAATTATAGTGAATCAGAAGGGCTCTGCAGGAAGGAAGAACCACAGAGTGTGCTGTGCAAGAAAGAAGATACAGAAGGATTTAATgagattgatataaaatataatgtggCTGATACTATTTCTTCTGAAGCAAGTTCATACGCTGCACATTGTGTACTGTTACCAGATTccaaaaatgaaaatcagTTGCGTCATACCATGGCCGGGGCAAGTAGTTCGCATAACCTTGCATCGGAAGAAATTATCGAATCTTTAAATGAAACGCGTGGCAATAACTTTAGAATATTCGATAGTGGAAGTGAATTTGATACTGATGAAAGCGATGAGGAAATTGGGGCTGGATATCGCAATGATAATATTGGTGATTCAGAAGACAGTGATGTTAGTGATGGTGAAAGTGATTTACAAGTGAAGCGTTTACGAAAAGATACAGATTGGGAATGGGAAAAAGTGGACGATTCTTACATGTCACAAAAATTTGTTTTCTCTGAAAGACgtgaaataattaaacaagtagAGAGTGTTTCGGAagcatttaaacttttttttgatCAATACATATTAACTAAAATTGCAGAGGAGACAAATCGCTATGCTAACGATTACATAAATTCTAAACAAGATAACCTGACGTCACGGTCTAGAGTTCATGGCTGGAAAAATGTCGACACTGATGAATTATATACTTATTTTGCGTTACAAATTCTTATGGGAGTTATTCAGAAACCTACAATaaagtcatattttaataaaaatcctGTAATTGACACGCCTATTTTCTACAAGACAATGAGACAAGACAGATTTGAATTGATAAatcgatttttacattttgttgACAATTCACAACTTCAGAGTTACGAAggaaacaaaaaattgtttaaaattaatccaaTTATCAAGCaccttaatgaaaaatatagaacactgtacaaaatgggtgaaaatatttctttagatGAGTCTTTGACATTATGGAGTGGAAGACAGGACATCAAAAAGAACCTACCTCTGAGAGCTGCCAAATTTGGTATAAAATCTTACGAGATCTGTGAGTCGACGACAGGTTACTTGTGGCAATTTGTTATATACACTGGCAACACAACTGAAGGTGATACTGATGTTATGTCTATTCAAGTGCAGAAGACAACACAAATTGTAGTAAAGTTGGTAGAACCTCTCTTTGGTaGTGCGCTATGCAAGATGGAAGATACAGAGGAATTGAATGAGATTGATTCAAAATATTTTGGCACTGAAAGTAATTCTACTGAAGCAAATTCGGATGATGAACATTGTGAATTGTTACCAGATAccaaaaatgaaaatcagGATTTTCATTGTAACATGAATCACCAGAGGCTAAATTTAGAAGAATGGATGAAAGCTAACAATATAAAAATCACGGACCAGAATAATCTAGAAAATGGAAAGTTTGGAGTGCACTTCAAAGAGGCTTCAGAATGTGACAATATTGACTCTGAAAAGATGCACCAAATCAAAGAAGAGCTTAATGATTCTGATGAGGAGCAAGAAATGAAATGTGTTGATACTAATGTGATGTGCTTGATTAAAGAAGAACCAGGAGAAATTGAGTATGGACCTGATGAACCCAACTCTGGAAGTGACTCCAATGATGAACATTCAGAATATAAATCTGTTTTGGAACCTCagGTTACATTTATTAAGATGGAGAATGATACCAAAGATTTTGAGGACTTGATGGAAACTAGTAACACGAGCCCTGTCGATGAGGGAAAACTGGAAAGTGAAGATTCCATCCTTGCTTCCGGatctgaaaattttaattctacatCTAAGAACGATAACAGTTTGACTGTGAGTGGCAAAGGATTCCATCGTTGTAAAACTTGTGGCATGACTTTCAGTTCTGAATTTCAATTGAGGCAGCATAGGTTAGTTCATAAATCTGATTCGGTAGATAATTGTTTTGATTGTGAAATTTGTGGTCGATCATTTCCAACTAAGGCAAAAATATATAGGCATATGCTCATCCATCGAAGTGAGCGTCAAGTTTCATGTCAATTTTGCAGTAAAACATACTTATACAGAAGTGAACTCAAGAAACATATGCGTTTTCACACCCGTGATCGGCCATTCCCTTGTAACTTTTGTTCAAAATCTTTTATTGAAAGCGGTCATCTTAAGGCCCACGTTCGTACCCATACTGGTGAACTTCCATATTCTTGCAATATTTGCTCTAAATCATTCTCTCGCAATAGTGGTCTTGTACGTCATATTCGGATTCATACTGGGGAACGtccattttcatgtaatttttgtGGCAAAACATTTTCGCATAAGAATGGTCTCAACAAACATGTACGTATCCACACTGGTGAGCGACCATATTCCTGTAATGTTTGTAGTAAAACTTTCATTGAAAATTCGGGTCTTAAGTATCATATGCTTACACATACAGGAGAACATCCATTTTCTTGCAAACTTTGTCCTAAGTCATTTTCATGTAATGTAGGCCTTGTAAGACATATGTTGACTCACACAGGAGAGCGGTCCTTTTCATGCGAAATTTGCAATGTATCTTTCTTCCATAAGAGTGACCTCAAAAAACATTCTTGGACTCACTCTGGCACACGGCCATTCTCATGTGaaatttgtaataaatctttCCCTGAAAAACATAAACTTATGGAACATGAGCGTACTCAtacaggtgaacgtccatttactTGCTCTGTATGCAACAAGTCATTTTCACTTAACAGCAATCTTACAAGACATATGCGTACTCACACTGACAAATCTATGGAACCAAGTGACTCTTTGAAATAG
Protein Sequence
MNQIREGPDPSEFRHNGIETELNTKFDIKEELDNEFECQYNYSESEGLCRKEEPQSVLCKKEDTEGFNEIDIKYNVADTISSEASSYAAHCVLLPDSKNENQLRHTMAGASSSHNLASEEIIESLNETRGNNFRIFDSGSEFDTDESDEEIGAGYRNDNIGDSEDSDVSDGESDLQVKRLRKDTDWEWEKVDDSYMSQKFVFSERREIIKQVESVSEAFKLFFDQYILTKIAEETNRYANDYINSKQDNLTSRSRVHGWKNVDTDELYTYFALQILMGVIQKPTIKSYFNKNPVIDTPIFYKTMRQDRFELINRFLHFVDNSQLQSYEGNKKLFKINPIIKHLNEKYRTLYKMGENISLDESLTLWSGRQDIKKNLPLRAAKFGIKSYEICESTTGYLWQFVIYTGNTTEGDTDVMSIQVQKTTQIVVKLVEPLFGSALCKMEDTEELNEIDSKYFGTESNSTEANSDDEHCELLPDTKNENQDFHCNMNHQRLNLEEWMKANNIKITDQNNLENGKFGVHFKEASECDNIDSEKMHQIKEELNDSDEEQEMKCVDTNVMCLIKEEPGEIEYGPDEPNSGSDSNDEHSEYKSVLEPQVTFIKMENDTKDFEDLMETSNTSPVDEGKLESEDSILASGSENFNSTSKNDNSLTVSGKGFHRCKTCGMTFSSEFQLRQHRLVHKSDSVDNCFDCEICGRSFPTKAKIYRHMLIHRSERQVSCQFCSKTYLYRSELKKHMRFHTRDRPFPCNFCSKSFIESGHLKAHVRTHTGELPYSCNICSKSFSRNSGLVRHIRIHTGERPFSCNFCGKTFSHKNGLNKHVRIHTGERPYSCNVCSKTFIENSGLKYHMLTHTGEHPFSCKLCPKSFSCNVGLVRHMLTHTGERSFSCEICNVSFFHKSDLKKHSWTHSGTRPFSCEICNKSFPEKHKLMEHERTHTGERPFTCSVCNKSFSLNSNLTRHMRTHTDKSMEPSDSLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-