Bger006499.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000253.1:330005-388872[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0001 0.0059 17.6 0.2 1 19 100 118 100 120 0.96 2 13 2.6e-05 0.0015 19.5 5.1 1 23 128 150 128 150 0.98 3 13 1.9e-06 0.00011 23.1 0.8 1 23 152 174 152 174 0.98 4 13 0.00036 0.021 15.9 5.0 1 23 182 204 182 204 0.98 5 13 1.1e-05 0.00061 20.7 3.0 1 23 210 232 210 232 0.96 6 13 0.00016 0.0091 17.0 0.8 1 23 238 260 238 260 0.96 7 13 3.2e-06 0.00019 22.3 2.6 1 23 266 288 266 288 0.99 8 13 0.0073 0.42 11.8 3.1 1 23 294 316 294 316 0.98 9 13 0.00021 0.012 16.6 1.1 3 23 366 386 364 386 0.97 10 13 1.9e-05 0.0011 19.9 0.1 1 23 392 414 392 414 0.94 11 13 5.8e-06 0.00034 21.5 0.5 1 23 420 442 420 442 0.96 12 13 0.00066 0.038 15.1 0.2 1 23 449 471 449 471 0.94 13 13 0.0001 0.0059 17.6 1.6 1 23 497 519 497 519 0.97
Sequence Information
- Coding Sequence
- atgtacagcTGGGCCAAGAAAAATTGTCACACAAGATTCGATCAAGTGCCAGGAACAAGCTTCGTCCGCAAGTTTTCTCAACTCTttcagtacaaaatatgtgtGGGTGCTGTGAAAGCAATGGAGCAAATACTCGTCAAGCAGGAAATGGATTCTGAAGATGAAGCATTGCACCTCCAGGCTGATAGCTTGAAAGAGGAAAATCCTGTTTGGAGCGCTCCTGCTACGGATTTAAACCAGAAAGAACATTTAGTTGCTTCGACGGAGGATGCCGTGCATTGCAGACTGAAGCATCCATTTCGGTGTCTTGTGTGCCAGAAAACCTTTATCCGCGAGGACTCTCTTAAAAGGCACGAAGCATGTCACGCAGAAAATGGTCAGTTTCgttgtaaaatatgcaaaaaatgtttctCGCAAAGATCCCGTCTGAGTAGCCACATGGGTATGCATTCATTTCGATGTGACATTTGTGAAAAAAGCTATGGCCGAAAAAGCGATCTCAAAAGACATGTAGCAAAACACATTGGCGGCCATCATCGTCCCTTCCAGTGCCACGTCTGTCAAAAGCACTTTTCTTACAAATACATTCTGGAGAAGCACATGATCATTCACACGAGCGATCGCGAGTTCAAATGCGAAGTGTGCGATAAATCGTTCTTCTACAAGTTCAATCTTCGCACGCACATGTTCGCCCACACTGGCGATTCTTCTTTTCAGTGCGACTTTTGCGAAAAGTCTTTCCCGTACAGGAGCAAACTCGATAAGCACGTCGTCATTCACACGGGGGATCGCAAATATAAATGCGAACTATGTAACAAGCATTTTGCGCAGAAGGGGACTCTGAACGTCCATATGTACACGCACGTGCCCAATCCTCGGTTCCAATGCGAAGTGTGCAAAAGATATTGTTTGCAAAAAAGTGACCTTATCAGACATAGGATAACGCATTCTGGCAGTCGCCCTTTCTGTTGTTTCCGAAAGCAGCGCGTTTCGCGGGACGTGGGCGTCTCTACGGAAGATTTGAACGGTGACTCTCGATCGCTCGACCCGGAGCAGAGGCCGAGCATGGTGCAGGGAGGTTGGAAACCGTTCGGTTGCGAGACGTGCGGCAAGCGATTCACTCTGAAAGGCAGTCTGAAGACGCACGAGAAGCTGCACGGCTTTCGACCGACCTATAATTGTGACGTGTGTGGCAAAAGTTTCAAGGTGGCGTCCGGACTCAAGTCTCATGCCGCCTTGCACTCTGGACAGAAGCCGTTCCGGTGCGAGATCTGTGGGAAGACTTTCACGTTGAAAGGAAGCTTGAAGACGCATTCCGCGATTCACGCCACAGACCGCGAAGCGTTCCCTTGTTTCACTTGCGGGAAGATGTACAAAGGAAAAGCCAGCCTCCAGTCGCACGCCGCGCTGCACGTGGGGTGCAGGAAATCACCCGAGTGCGAGGTTTGTTATAAGTCTCATAGAATGCCAGAGTATGAACGGAAGCCTTTTGTCTGCCAGGTCTGCGGAATGTGCTTCGAGCTCAGAAGCCACCTCATACAGCACATTGGCTCTCATTTGTTGATGCTGTCGTCTTTCCCTTTCAATCCTACTAAATTTTATCGTCTTTATCTACTCACCAAATTAATTGCAAAAGATTGGGAAGGGCAAAGACTTCGTCGTTCAGACCAAATCGAGATGGTGTTTGCCCGTTTCCGCAGCTCTTCCATGGCTACGACATCCCGGAAGGAGCCGCCGCCTCCCAGCCCGTGGTCGCAAGAGAATGCTCGAAGAAAGAAATCTGCAGCCTCAACTGCGACTCGCCTCCGTCTCTTGaacagTTGTAGTGAGGAAGCGCCTTCCCCGACTGGCCCGGCTTACAAAATTGTTTTGAGTTTTGTGCATGGACGCAGAATGGCTGCCAAGACTtttgttattataaataaaaattctggtTTCTGTTGTTTATTGTAA
- Protein Sequence
- MYSWAKKNCHTRFDQVPGTSFVRKFSQLFQYKICVGAVKAMEQILVKQEMDSEDEALHLQADSLKEENPVWSAPATDLNQKEHLVASTEDAVHCRLKHPFRCLVCQKTFIREDSLKRHEACHAENGQFRCKICKKCFSQRSRLSSHMGMHSFRCDICEKSYGRKSDLKRHVAKHIGGHHRPFQCHVCQKHFSYKYILEKHMIIHTSDREFKCEVCDKSFFYKFNLRTHMFAHTGDSSFQCDFCEKSFPYRSKLDKHVVIHTGDRKYKCELCNKHFAQKGTLNVHMYTHVPNPRFQCEVCKRYCLQKSDLIRHRITHSGSRPFCCFRKQRVSRDVGVSTEDLNGDSRSLDPEQRPSMVQGGWKPFGCETCGKRFTLKGSLKTHEKLHGFRPTYNCDVCGKSFKVASGLKSHAALHSGQKPFRCEICGKTFTLKGSLKTHSAIHATDREAFPCFTCGKMYKGKASLQSHAALHVGCRKSPECEVCYKSHRMPEYERKPFVCQVCGMCFELRSHLIQHIGSHLLMLSSFPFNPTKFYRLYLLTKLIAKDWEGQRLRRSDQIEMVFARFRSSSMATTSRKEPPPPSPWSQENARRKKSAASTATRLRLLNSCSEEAPSPTGPAYKIVLSFVHGRRMAAKTFVIINKNSGFCCLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -