Bger027306.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000522.1:635942-653376[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0041 0.24 12.6 2.1 2 21 281 300 280 301 0.93 2 16 0.0011 0.065 14.3 0.1 2 23 308 329 307 329 0.97 3 16 0.00012 0.0069 17.4 0.8 3 23 344 364 342 364 0.97 4 16 0.00014 0.0082 17.2 1.7 1 23 379 401 379 402 0.96 5 16 2.6e-05 0.0015 19.5 2.9 1 23 432 454 432 455 0.96 6 16 5.8e-06 0.00034 21.5 3.8 1 23 485 507 485 508 0.96 7 16 0.0093 0.54 11.5 0.7 2 23 548 570 547 570 0.93 8 16 0.00048 0.027 15.5 1.2 1 22 576 597 576 597 0.95 9 16 0.0048 0.28 12.4 0.0 2 19 603 620 602 621 0.95 10 16 9.3e-05 0.0053 17.8 2.0 1 23 632 654 632 655 0.95 11 16 2.8e-05 0.0016 19.4 1.5 1 23 700 722 700 722 0.98 12 16 0.00011 0.0063 17.5 0.1 1 23 730 752 730 752 0.96 13 16 2.4 1.4e+02 3.9 2.8 1 19 758 776 758 779 0.89 14 16 0.0004 0.023 15.7 0.9 3 23 812 832 810 832 0.97 15 16 0.039 2.2 9.5 0.1 1 23 855 877 855 877 0.95 16 16 0.00033 0.019 16.0 0.3 1 23 886 909 886 909 0.96
Sequence Information
- Coding Sequence
- ATGAAATCACTTCCTAAAAATGGAGCAGGGAATATGTTTCAAGGTATCTTTATCAAAGATTGTCCTGGGGAAGCTTTCTTGCCTGAACAGGCAGGAGATATCAGacaGAAATCTAATTCTGGCACAGAAGTCAACATCTTGGGTCCAAGCACCTCCAGAAATTCTCCGTTAAATATAACCACTGCTGTTATAAAAACTGATCGGAATACCATAAAGCAAAGCAGTAATAGTAACATGATGTTAAGCACTTCCATAATTCCTCCATTGAATGTAGCGAGTGCTACATGTGTTAGTGCATCTCCCGACATTAATGTAATAGAAAATACCATGATATCTTCCGAAGATAACGCAATGTTAAATACTGGACCATCTCCTAAGGAAAGTGTTAGAAAGCCTGCTGAAGAGAGTCCAATGTTAAACGCTCTACTCGATCTTGAGAAAAGACCTGTGCTAAATATACCGGTGCCTGTACCgagttctaaaataagatttatGAAAACATCTATGCCAAAAATTAATATACGTGATACAGGAGTTGGTAACATAGCTAAAAAAGCACGAGGTACAGCCTCAGTTCAAAGGACACAAAAATCTGTTATGCCAGTATCTTCATTTCTGCAAAATCCTCCAGATACTACATTATCTACAAATATGTCAGCATCATCGTCATCTGGAATTACTTATCAGACATTTTTCCCTTCTACTTCAGAGAACTCTTCAGAACCTCTACAGTCGTCTCCATTCACAGAATCTGTCAGTCTTGAGGAATCTTCAAAACCTTCAACCAGCGTTCATTCTGAAACACCAGCTTTTTTTAAACAAAGTGGCATTTCTCCATGGAGTTGTAAgttctgtaataaatattataaaactcgTGAAACATTACAGAAACACAAGAAGTTATTTTGCCCGAATAAAAGTACATGTAGTAAGTGTGGTAAAGTCTTAGGCGATGCTAAAGAACTTGCAATTCATCAAAAGTTACATATCATGATACGTATAGATCTCCCAGAAGAAAACCTGCTTGCTTGTACAATATGTGATAAAAAGTTTGCTGCGAGATCTATGCTTCGTATGCACAAGAAAACTCATGACATTGAACAAAGATCATCAATCGCTGAGCCTGAAAAGCAATACAAGTGTCCCAGTTGTTCTCGTATGTATGTCAAGAAGATTAATCTTGATATTCATATACGAACGCACCACTCATTGCGAGGAATTAACCGACTAGAAAACAATCGGTTgatttttcataatattgaagGGTCATCATTCACTGCGCCTGTAAAGCAATACAAGTGTCCCAGTTGTTCTCGTACTTATGTCAAGAAATATAATCTTGATGTTCATATACGAACGCACCACTCATTTCGAGGAGTTAATCGACAAGAAAACAGTCAGTCAATTTTTGGTAATATTGAAGGATCATCAATCACTGCGCCCGTAAAGCAATACAAGTGTCCCAGTTGTTCTCGAACGTATGTCAAGAAATATAATCTTAAAATTCATATACGAACACATCACTCATTGCAAGGAGTTAACCGACAAAAAAATAGTCAGTTGAGTTTTGATAATAGTGAAGGAAGCGAGTTGCCATTCACCCCAGAAGATGAATCGAAACCCGAGTGGCAAAAGCAGTGCAGTTGTAAATACTGTGGACAAATATATGAGGATTCAACTGTACTTTGGATGCACATGATACAACAGCACAGTGAAGAGCAAGCCTTCCGCTGCGAAAAATGCGGCAAAGAGTTCAATCAGCAACAAGCATACCTCAGTCATAAGAAAACTATGTGCGTAAAGGTGCGTTGCAGGGTATGTGGTAAGATATACTCTTCTCCAAAAGCACTTCGAGAACATGAATGGAGTAAGCATGGGATCGAAAAGGTCTCCCATCGTTGTCGACTTTGCGGGCAAAGTTTCGTCACTCGTTCTGCTCTTCTCATCCACGGTAGAGTGCATCATATTGGAAAGAAGGGTAATAATTCTTCGATTCCAGTTTCACAAGAAGAGATCGATGTCCCGGAACCGGAGAGCTCTGAAACTCAACAGCTGCCTGAGCAACAGCAACAACTAGTTCAGCAGGAATCACCCAATTTTACATGTAGAATATGTTACAGAAAATTTAGTAGTTCACAAGGATTGGAACGTCATATACAGATGCATGCTACGGGAAAGCATGTCTTCTATCCTTGTGAAATATGTGGGAAGAAATTTGTATCATTAGAAATGTACAAAACACATGCTGCTTCACATTCAGTATCGCAGTCATTCCTTTGTTCTCGATGTAATAAGATTTTTTTCAAGGAAGAACTTTTCAGAAGTCATTCCTGCGAGAGTAGTAGCAAGCAAGCTTGTTTAACGTGTGGGAGCATGCTGACGGAGGAAGAACATGTAAGCCATGTGTGTGGAGAGAAAGATGACATGGTGCACTGTTCGCTGTGCTCTGCTGTTTTTACTTCTTACAAAGGGTTAGCTAGTCATATGAGAACACACAAACGAACAAGTGAAAATCAGGCATCTGATTTCCAAAGAACTTTTGTTCTATTGAACAGCGGATTTTACAAGTGCAATTTATGTGGGAAAATAACACAGACACAACAAGGTGCCGCTGCTCATTCAAGATGGCACATTGGACCTCAAATTGTGAGGCCATTCAAGTGTCCATTTTGTAACCGAACCTACTCTTCGGAATCTGGACTTTACGGTCATATTACCATCGAACATCCGGAATCGGCTTAG
- Protein Sequence
- MKSLPKNGAGNMFQGIFIKDCPGEAFLPEQAGDIRQKSNSGTEVNILGPSTSRNSPLNITTAVIKTDRNTIKQSSNSNMMLSTSIIPPLNVASATCVSASPDINVIENTMISSEDNAMLNTGPSPKESVRKPAEESPMLNALLDLEKRPVLNIPVPVPSSKIRFMKTSMPKINIRDTGVGNIAKKARGTASVQRTQKSVMPVSSFLQNPPDTTLSTNMSASSSSGITYQTFFPSTSENSSEPLQSSPFTESVSLEESSKPSTSVHSETPAFFKQSGISPWSCKFCNKYYKTRETLQKHKKLFCPNKSTCSKCGKVLGDAKELAIHQKLHIMIRIDLPEENLLACTICDKKFAARSMLRMHKKTHDIEQRSSIAEPEKQYKCPSCSRMYVKKINLDIHIRTHHSLRGINRLENNRLIFHNIEGSSFTAPVKQYKCPSCSRTYVKKYNLDVHIRTHHSFRGVNRQENSQSIFGNIEGSSITAPVKQYKCPSCSRTYVKKYNLKIHIRTHHSLQGVNRQKNSQLSFDNSEGSELPFTPEDESKPEWQKQCSCKYCGQIYEDSTVLWMHMIQQHSEEQAFRCEKCGKEFNQQQAYLSHKKTMCVKVRCRVCGKIYSSPKALREHEWSKHGIEKVSHRCRLCGQSFVTRSALLIHGRVHHIGKKGNNSSIPVSQEEIDVPEPESSETQQLPEQQQQLVQQESPNFTCRICYRKFSSSQGLERHIQMHATGKHVFYPCEICGKKFVSLEMYKTHAASHSVSQSFLCSRCNKIFFKEELFRSHSCESSSKQACLTCGSMLTEEEHVSHVCGEKDDMVHCSLCSAVFTSYKGLASHMRTHKRTSENQASDFQRTFVLLNSGFYKCNLCGKITQTQQGAAAHSRWHIGPQIVRPFKCPFCNRTYSSESGLYGHITIEHPESA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -