Bger027289.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000522.1:526444-539810[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.4e-07 4.3e-05 24.3 0.5 1 23 99 121 99 121 0.97 2 14 1.9e-05 0.0011 19.9 3.6 1 23 127 149 127 149 0.98 3 14 0.00028 0.016 16.2 0.8 1 23 155 177 155 177 0.97 4 14 8.4e-05 0.0049 17.9 0.6 1 23 183 205 183 205 0.97 5 14 5.6e-05 0.0032 18.4 0.3 1 23 211 234 211 234 0.95 6 14 0.033 1.9 9.7 0.6 2 14 245 257 244 260 0.90 7 14 0.0045 0.26 12.4 4.6 2 19 281 298 280 302 0.91 8 14 2.8e-06 0.00016 22.5 1.9 1 23 308 330 308 330 0.98 9 14 0.00056 0.032 15.3 1.1 1 23 336 359 336 359 0.95 10 14 3.4e-05 0.002 19.1 0.7 2 23 370 391 369 391 0.97 11 14 9.3e-05 0.0054 17.8 2.2 1 23 397 419 397 419 0.97 12 14 2.4e-06 0.00014 22.7 2.7 3 23 427 447 426 447 0.98 13 14 2.3e-06 0.00013 22.8 3.2 1 23 453 475 453 475 0.98 14 14 0.024 1.4 10.1 2.0 3 23 483 503 481 503 0.98
Sequence Information
- Coding Sequence
- atgtttgcGTTATTGTATTCGAGTGAAAGATATATTAACAGTCGTAGGAAATCTGACGGCAACTCCACTCGGCGCAAGAAAACCAGAAATCTGAAAGCTAAAATATCGAGGAAGCCCTCCAAGAAACCGTTAAAGAAAAAGAAGCCGAAAGAAGTTTTCATGGGGCATCAAGTGGATGTTTGTGAGGACGTTAAGAAATCCTTTGTGTGCAACATTTGTTGTGTTTCCCTGCTCAGTCAGTCAGAACTAGATTTACATACTAAGGAACATGGACAGTTGAAGGATCCGAATGATTTCAGATGTAATATTTGTGGTAAGGTGTTTGTTACGAAAAAGGTTCTGAAGCGGCACCTTGTAGTGCACAGTGTTGATAGGCCATATTCTTGTGATATTTGCCATAAGACCTTCAAGCGTCCCTACGATATCACTATACATAAAAAGAAGCATACTGGGGAAAACAAACATTCCTGCGATATATGTGGGTATGCCACAATTTATAGATCGGCACTCGCTACTCACCGGAAAAGACACTTCGAAGAGTATAAATATCGATGTGAGATTTGTGGAAAAGGCTTCTTCGTGAACACTTGGTTGCAGGAACATAGAAATTTTCACACGGGAGAAAAACCATTCCAGTGCGATATTTGCGGTAAAGCGTTTCCATATACGCGTTATCTTGTGGCCCATAAGAAGGCAAACCATCCCGATGCCCAGCATCCTGCCAAGATAAATCAATGCGAAACATGCGGTAAAGTCTTTGCTCATAAAAAgtctactcAGGAAACCAGTAGAGAAACTACTCACAGGCCACACAAAAATTTGTTTGCTCCAAAGGAAATCAAATGTGATGTCTGTGGCAAAATTTGCAAAACAAATAAGCTTTTGAAGCGCCACTGTGTTAGGCACAGCGATGCTCGTCCATATTCGTGTGACATTTGTGGGAAAACATACAAACGCTCCTACCAAGTCAGCAAACATAGGAAAATACACTCGGTCGACACACCTTATCGTTGCGAAGTCTGTGGCGAAGAATTCCCGTACACGAGACATCTGGCCTCACATAAAAAGGCAAAACATCCCGAAACGCAACATCCGGCTAAAATGAACCAGTGTGAGGCATGTGGTAAAATTTTTGGACACAAAAACTCTCTTGCTATACATATGAGATCACATATGGGTACGAACGTGTTCATTTGCGACATTTGTGGTAAATCTCTCACAAATAAGGAACATTTGAAATTTCATCGTAGAATACACACTGGGGAAAAACCCAATATATGCGATGTTTGCGGAAAAGCATTTAGCAAGCGTTGCAATCTGAAGTTGCATCAGCGTACGCACACCGGCGAAAGGCCATACAACTGTGACGTTTGTGGGAAATGTTTCACTCAGCGTTCAACATTAGTAATCCATAAACGATATCACACGGGACAAAGACCATATTGGTGCCAACTTTGTAATAAAGGATTCGTGTGTAAAGCTCTTCTTAATTCTCACCAAAAGAGCCACTGTATTTGA
- Protein Sequence
- MFALLYSSERYINSRRKSDGNSTRRKKTRNLKAKISRKPSKKPLKKKKPKEVFMGHQVDVCEDVKKSFVCNICCVSLLSQSELDLHTKEHGQLKDPNDFRCNICGKVFVTKKVLKRHLVVHSVDRPYSCDICHKTFKRPYDITIHKKKHTGENKHSCDICGYATIYRSALATHRKRHFEEYKYRCEICGKGFFVNTWLQEHRNFHTGEKPFQCDICGKAFPYTRYLVAHKKANHPDAQHPAKINQCETCGKVFAHKKSTQETSRETTHRPHKNLFAPKEIKCDVCGKICKTNKLLKRHCVRHSDARPYSCDICGKTYKRSYQVSKHRKIHSVDTPYRCEVCGEEFPYTRHLASHKKAKHPETQHPAKMNQCEACGKIFGHKNSLAIHMRSHMGTNVFICDICGKSLTNKEHLKFHRRIHTGEKPNICDVCGKAFSKRCNLKLHQRTHTGERPYNCDVCGKCFTQRSTLVIHKRYHTGQRPYWCQLCNKGFVCKALLNSHQKSHCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -