Bger000128.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000374.1:1063884-1067211[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00024 0.014 16.5 1.9 2 23 109 130 109 130 0.97 2 13 3.5e-05 0.002 19.1 0.9 1 23 136 158 136 158 0.96 3 13 0.00015 0.0085 17.1 0.7 1 23 164 186 164 186 0.97 4 13 2e-05 0.0012 19.8 1.3 1 23 192 214 192 214 0.98 5 13 7.9e-05 0.0046 18.0 2.7 1 23 220 242 220 242 0.96 6 13 3.3e-06 0.00019 22.3 3.2 1 23 248 270 248 270 0.98 7 13 0.00092 0.053 14.6 1.0 1 20 276 295 276 298 0.94 8 13 1.3e-05 0.00075 20.4 1.3 2 23 304 325 303 325 0.96 9 13 0.00041 0.024 15.7 2.1 1 23 334 356 334 356 0.97 10 13 8.2e-07 4.8e-05 24.2 2.0 1 23 362 384 362 384 0.98 11 13 0.0015 0.086 14.0 0.4 1 23 390 412 390 412 0.96 12 13 1.9e-05 0.0011 19.9 3.4 1 23 418 440 418 440 0.98 13 13 1.1e-06 6.6e-05 23.8 5.5 1 23 446 468 446 468 0.98
Sequence Information
- Coding Sequence
- ATGACATTGGCTGTTTTCAGTGTCAGGAATATGGAAGGCATAAAATTGGAACCAGAATCTGATGATGAACCCTCTCTGGATGACATACAACATGTAGTAATTAAGCAGGAGCATCAGGATGTATGTGCTAAAGAGGAGCTATATTATGAAACTGAAGAACAAAACAGCATATCAAATTTGAAACAGGAGGATCTTCTACCACCACATGAGCTGGTTACTTGTGTACAGGAGGACACTCCTGCAGAAGCTTCATTGTGTATTGATGGATATGAACAAAATATACAAGATAGAGAGCTTTCCCTTGAGAGTGACAAGCTGCCTCCAACATGTACTATTTGCAATAAAACTTTTAGCAATAAACGAAACAGAGATTCACATTTGCTTATACACACAGGACAGGCAGCTTTTACCTGTGTTATGTGTAATAAGTCATTTATCTCCCAACGGAATCTGGATCGTCATAAAGTTGTTCATACAAATGTATTACCTTATTCGTGCAATGTCTGTAGCAAATCATTTCGTCAAAAAGTTAATAGAGACATTCATCTTCTTGTTCATGGTGGGAAAGGACGGTTCCCATGTGAAGTGTGCAACAAAACATTTAATCTAAAAAGTGTTCTGAAGAAACATTTCCGAGTTCATAATTCTGAATGCTCATTTTTTTGCGACACTTGCCCTAAAACTTTTACTCAAAAGAGATATTTGGATAGACACAAAAGTATTCATACAGGAGAACGCCCATTCACTTGCGACATATGTGAAAAGTCTTTCAGTAGAAAGTTTCATCTTGATAAACATTTAAGTGTTCATTCTTCAGATAGACCATATACCTGTGAAGTTTGTAAAAAATCTTTTTACGAGAAAACAACTTTGGACAGACATACGCCAATCCATGAGAGTGGGCCTTGGTCATGTGAGTCATGCAACAAAACATTTATACAAAAACGTTACCTTGATAGGCACATGCGTCTGCATTCGTCAGGAGGATTAGAGCGACCATTCGCCTGTGACATATGCAAGAAAGCATTCACTCTAAAATGTAGGTTGATTAGGCACCAGTCTGTACATAACACTGATCGAccattttattgcaatatttgtaGTCAGTCATTCAAGCAAAAAGACACTTTAAATACACATTTAAGGGTTCATACAGGACATCGTCCTTATTCTTGTGATATATGTAAGAAAACTTTTAGAATGAAGAACATTCTTGTGGATCATTTGTTGGTGCATAGTGCAGATCGACCTTATTCTTGTAAGCATTGTCCCAAATCCTTTGCTTCCAAGAAAGTTTTAGACCGTCATTTGAGATATCACAGTGATGTTAGACCTTTCTCCTGCAAGATTTGCAAGAAGTCCTATAAGCGTAAAGATCATTTGCGTTTACATCTTCGAATGCACAAAGGACATCCAGATTTGGAAGATCTGTATGACTAA
- Protein Sequence
- MTLAVFSVRNMEGIKLEPESDDEPSLDDIQHVVIKQEHQDVCAKEELYYETEEQNSISNLKQEDLLPPHELVTCVQEDTPAEASLCIDGYEQNIQDRELSLESDKLPPTCTICNKTFSNKRNRDSHLLIHTGQAAFTCVMCNKSFISQRNLDRHKVVHTNVLPYSCNVCSKSFRQKVNRDIHLLVHGGKGRFPCEVCNKTFNLKSVLKKHFRVHNSECSFFCDTCPKTFTQKRYLDRHKSIHTGERPFTCDICEKSFSRKFHLDKHLSVHSSDRPYTCEVCKKSFYEKTTLDRHTPIHESGPWSCESCNKTFIQKRYLDRHMRLHSSGGLERPFACDICKKAFTLKCRLIRHQSVHNTDRPFYCNICSQSFKQKDTLNTHLRVHTGHRPYSCDICKKTFRMKNILVDHLLVHSADRPYSCKHCPKSFASKKVLDRHLRYHSDVRPFSCKICKKSYKRKDHLRLHLRMHKGHPDLEDLYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -