Bger020193.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blattella germanica
Gene Symbol
-
Assembly
GCA_003018175.1
Location
PYGN01000092.1:411467-425166[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0051 0.29 12.3 1.2 1 21 185 205 185 206 0.94
2 20 0.0009 0.052 14.6 3.0 1 23 212 235 212 235 0.96
3 20 0.00046 0.027 15.6 2.8 2 23 240 261 239 261 0.96
4 20 0.03 1.8 9.8 3.1 1 23 295 317 295 317 0.98
5 20 1.5e-05 0.00086 20.3 0.4 1 23 323 345 323 345 0.97
6 20 0.00021 0.012 16.6 1.2 1 23 350 372 350 372 0.99
7 20 0.013 0.76 11.0 3.9 1 23 433 455 433 455 0.98
8 20 0.044 2.5 9.3 0.3 1 22 544 565 544 568 0.91
9 20 0.13 7.3 7.9 1.0 1 23 733 755 733 755 0.98
10 20 2.4e-05 0.0014 19.6 0.9 1 23 760 782 760 782 0.99
11 20 0.023 1.3 10.2 0.3 2 23 790 812 789 812 0.93
12 20 0.00049 0.028 15.5 0.9 1 23 819 841 819 841 0.97
13 20 0.012 0.7 11.1 0.3 1 22 847 868 847 870 0.90
14 20 0.49 28 6.0 2.1 3 23 875 895 874 895 0.96
15 20 1.8e-05 0.001 20.0 1.2 1 23 902 924 902 924 0.97
16 20 0.0098 0.56 11.4 1.9 1 23 930 952 930 952 0.97
17 20 7.3e-05 0.0042 18.1 0.8 1 23 958 980 958 980 0.97
18 20 2.1e-06 0.00012 22.9 3.8 1 23 986 1008 986 1008 0.99
19 20 0.00063 0.036 15.1 0.1 1 23 1014 1036 1014 1036 0.97
20 20 0.027 1.6 10.0 2.9 1 23 1042 1065 1042 1065 0.95

Sequence Information

Coding Sequence
ATGAAGAAAGTAACATTGGGAACAGCGAAAAAGGTTGTTAAACATTCTGTATCAGGGATGTATCCTAGAAACATGGTGCCACATTGTTTTGTTTGTGATGAAGAAATTGTAGGCCGAGGAGTACCTTTATTAATGAGCCACACCTCTTGTACAAAAACAGGCCTTCCAACGAAAATAGGACAACTGATGGGAGATGGTTTTATGGTAGTGGTGTCTATAGAAGATATGTTGTGCAAACGATGTAATGCACTATTGAATCAGCTTGATCAATTAGAGGCTGATTTGGATGTTCTTAAAAGTGTTCTAACAGattacttgaaaattaaatatgggCTCCTGAATGAAATGGACGAATTGGATACACAAAATAGTATAATGGAAAATAAGGACGATTCTGATGGGAGTGAGCCAGAATTGGAGCCTTTGTCCACAGTAGACAATGGCAATAAGACAATTGAAATTCTCTTAGATAAAGACTCTAACGtaacaaaagataaaataaatgcaGAGCCGAAAGATGTAACAAAATCTGAGTCAAATCCTTCAAAGCTTTACAAGTGTACAATATGTAGTTTTAAAACTTCTGATTCATCCACGTTACAATCTCATTTTTTGACGTGTAGTGAACTACCTTATAAATGTACTATATGTGAGAAAAGATTTGAAAGTCACAAGTATGTAAGGAATCATATAATGGAAACACATCTTTCAAATTGGACTTGTCATTTCTGTAATAAGACCTTTGCAGAGGAGAAGGAATTCACAAATCATATGAAAGAACATCTTGGTAATAATAGTACCATATCAAAAATTCCGATGGAGGAATCCCCTAACGCTAGTGGGGATGATTCTTATGACTTATTACAAAACATGCATGGAAGTTTTGAGTGCAATATATGTGATTACCAGTGTACCAACAAAAAGGTATTTGATGATCATGTTCGTAAACATATTGCTTTGAAACTTTTCCAGTGCAAGATATGCAAAGAAAAGTTTCCAAACGAAGCCGATTTAAATAAGCACATTCAAGATCACAAGCCAGAATTATTCAAATGTGAACAATGTAATGCTGAATTTGATAAAAAAGAGAGTTATACAGAGCATATGCAAACACACTTTGGTGTAATGGATATAAAGACTGAAACTTTAGAGAATTTGGTGAATGAAAATTCCATTGCTCTAGAAACCGTATTAAATGCATCAGCTGAGGATAATGGAAATACTATGATTACAGAACCTCCAGACAAGCCTGATTTGTCATCTTGTCTGGAGAACAAAAGAAATGAGATAGAATTTCATACTTGCCACATATGTTCATTAACATTTGTGAACGAATTTCTTTTTATTGAGCATACGAAAATGCACAAACAGAATGAACCATCTAAAGAACTCTTTAGTCAAGATGCCAATCAGCTGTTACAAATGGGCAACGAAGATTCAACTGAGCATGATGTGAATTCGATTGATTCTGAAGGAAGACAGCAATATTTAGAAATGGACGATAGCCTTGAGGACATGTTTGAGAAACTTCATGCTGAAACGGAGAAAGTTGCACAATTAGTGAACATTAATTGTAATGAAAAGAAAGTCCTTAACCAGGAAATGTTACCTCAGAACTCGCTAACTTCGTATAAATGTAGTTTCTGCCAAGCAGAATTTATGAATGACGACGATTTACAGTTACATCAAGTAACAGAGATGCATCTAGAAAGTGTCCCAGATTGCGAAACTGTCAGACTGCCCATAATGGTGGCGGATAAGACCGGTATTCATATTCAGGACAGAATTAGGGAAACTAATAATTGTGAACAAAACCAGATGACTTTGAACAATTCTGAAAGCTTGCCTATTGAAATAACTAACACAACACTTCTCATGGAACACCACAATCAGAATATTGCTGATAATCTTAAAGATATGATTATGCAAGGCGGACCTTCTGTGATGCAAGAAAGCGAAAATGCAAAAGATGGATTCATAGATATTTTTGATATGGTACGAGAGAAAAAACTAGCATCTAATGATGATGCCATAATTGATCACAATTTGCTACAAActatgtgtgagtctgagatcAAGAATGATCAAAACAAGTTGATGTCATCACCGTTGGACCTGAACCCATTTGATGCACCAAATTTGAAACAGCTCAGTGATAACATGTTCAATACCGCTCCAGCTCCGAGTAAGAAAACGTACGTGTGTGCAATGTGCGGTTTTAGGACACCTGTGATGCATGACCTAAGGATTCATTTTAAGAAACATAAACAAAAATCTTTTCAGTGTGCTGTTTGCAAGAAATCATATCCTAGTTCTCAAAAATTGACTAACCATTTAAGGGTACATGAGAAGTTTCGTGGTAAAATGACATGCCCGTATTGTTATGAAGAATTTCCAGACAAACTTAGGTTGCAGCAACATTTACAAGACAAACATCAAAAGGAAAAGGTAATGTATAAGTGTGCTTTCTGTAATGAAACGTTTAATACTAAAAAGGCTTACAAAGCTCATGAGGAGGTTCACCCGGAGAGGTTTTCTTTTAAGTGCGATGAGTGCGATCAACCGTTCATGAAGGAGAAGCAGCTGCTAGATCATAAAGACGCAGTTCATAGAGATCCTCATTGTCGATTCTGTGGTAAGGAAATTGTGAAGGCAAAAACTCTTAGAAATCACGAGCTAAGGCACATTAGGGAAAAAGACAGTTTTGAATGCGATATATGTAAGCGAGTGTTCAAGACAAAGACCGGTCTGAGACACCATGTAGCAGTGCACACTGGTGAGTACAAATATTGTTGTGATTATTGTGGCAGAGGTTTCATGTCTCGCATGATGATGGAAGAACATCGCAGCATGCATACAAAAGAGGAACGTTATATTTGTGATGTGTGTGGCCGCAAATTTAGCTTTCAGAGTACGTACTGGATACATCGCAAATGGCATGATAACCCTTATCCTTATAAATGCAGTTATTGCGGAAGAATGTTCCGGCATTCGTCGTTGTTGGCGGTGCACAAAAGGAAACATACGGGTGAAAGACCTTACAAGTGCCCCCAGTGTCCATTATCTTTTCCTGTAGGCGGAACTCTAAAACGGCACCTCATTCTTCATACGGGCGTATATCCATTTAATTGTGAAAGCTGCAAGCGAGGCTTCACTACTCGTCACAAATATGCCACCCATCTCGCCAAAATCCATTCAGACTTTGAACTGCTACATGCTAAACCTCAACAGAGCGAATACAAGATGGTTATTAGAGATGAACCTAAATTCAACCAACAGCAATCTATCTGGGAAGTGGCGGACGACTCGGTGACCGATCAGATTACTTTCAAATTAGAAGACGATGGCTCTAAAGACGCGGTGGGAGATGGAATTGCTTGTACTATAGTTTCGGATGACATGCTGGTAGATAATATAGTTCCTACAAGAGTGGTGGAAATAGTTCTGGATGAAGCTTCGCAAGCTGTTGCTACTGTCACCCTTGCAGAACATGCAAATATCCTTCCTGACATTTGGTaccagtaa
Protein Sequence
MKKVTLGTAKKVVKHSVSGMYPRNMVPHCFVCDEEIVGRGVPLLMSHTSCTKTGLPTKIGQLMGDGFMVVVSIEDMLCKRCNALLNQLDQLEADLDVLKSVLTDYLKIKYGLLNEMDELDTQNSIMENKDDSDGSEPELEPLSTVDNGNKTIEILLDKDSNVTKDKINAEPKDVTKSESNPSKLYKCTICSFKTSDSSTLQSHFLTCSELPYKCTICEKRFESHKYVRNHIMETHLSNWTCHFCNKTFAEEKEFTNHMKEHLGNNSTISKIPMEESPNASGDDSYDLLQNMHGSFECNICDYQCTNKKVFDDHVRKHIALKLFQCKICKEKFPNEADLNKHIQDHKPELFKCEQCNAEFDKKESYTEHMQTHFGVMDIKTETLENLVNENSIALETVLNASAEDNGNTMITEPPDKPDLSSCLENKRNEIEFHTCHICSLTFVNEFLFIEHTKMHKQNEPSKELFSQDANQLLQMGNEDSTEHDVNSIDSEGRQQYLEMDDSLEDMFEKLHAETEKVAQLVNINCNEKKVLNQEMLPQNSLTSYKCSFCQAEFMNDDDLQLHQVTEMHLESVPDCETVRLPIMVADKTGIHIQDRIRETNNCEQNQMTLNNSESLPIEITNTTLLMEHHNQNIADNLKDMIMQGGPSVMQESENAKDGFIDIFDMVREKKLASNDDAIIDHNLLQTMCESEIKNDQNKLMSSPLDLNPFDAPNLKQLSDNMFNTAPAPSKKTYVCAMCGFRTPVMHDLRIHFKKHKQKSFQCAVCKKSYPSSQKLTNHLRVHEKFRGKMTCPYCYEEFPDKLRLQQHLQDKHQKEKVMYKCAFCNETFNTKKAYKAHEEVHPERFSFKCDECDQPFMKEKQLLDHKDAVHRDPHCRFCGKEIVKAKTLRNHELRHIREKDSFECDICKRVFKTKTGLRHHVAVHTGEYKYCCDYCGRGFMSRMMMEEHRSMHTKEERYICDVCGRKFSFQSTYWIHRKWHDNPYPYKCSYCGRMFRHSSLLAVHKRKHTGERPYKCPQCPLSFPVGGTLKRHLILHTGVYPFNCESCKRGFTTRHKYATHLAKIHSDFELLHAKPQQSEYKMVIRDEPKFNQQQSIWEVADDSVTDQITFKLEDDGSKDAVGDGIACTIVSDDMLVDNIVPTRVVEIVLDEASQAVATVTLAEHANILPDIWYQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-