Bger015795.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01001036.1:389847-402882[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6e-05 0.00094 20.1 2.7 1 23 125 147 125 147 0.96 2 12 0.00022 0.013 16.6 0.5 1 23 153 175 153 175 0.97 3 12 8.2e-05 0.0047 17.9 1.0 1 20 178 197 178 197 0.97 4 12 4.7e-06 0.00027 21.8 4.8 1 23 203 226 203 226 0.97 5 12 7.7e-07 4.4e-05 24.3 3.2 1 23 228 250 228 250 0.98 6 12 0.0072 0.41 11.8 1.1 1 19 253 271 253 274 0.93 7 12 2.8e-07 1.6e-05 25.7 0.6 1 23 278 300 278 300 0.98 8 12 0.0015 0.086 14.0 0.4 1 23 302 324 302 324 0.95 9 12 2.3e-05 0.0013 19.7 2.7 1 23 328 350 328 350 0.97 10 12 7.8e-07 4.5e-05 24.3 0.6 1 23 355 377 355 377 0.97 11 12 6.1e-08 3.5e-06 27.8 1.7 1 23 383 405 383 405 0.97 12 12 3.1e-05 0.0018 19.2 0.3 2 23 411 432 410 432 0.94
Sequence Information
- Coding Sequence
- ATGGTGGCATCTTGTTCTGCCTATAACTGTACCAATCGCTATAAGAATGGTTCTGGAGTTTCTTTCCACAGATTTCCTTTGCAGAATCCTGAGATGGTTGATAAATGGCTTCTAGCCataaagagagagaaaacatTTGTACCAACGCAGCACTCAAAAATATGTTCTGTGCATTTTAAAGATTCTGACTTTTGGAAATGTAGACCTGATGGTAATAAGATACTCAAAGATGATGTTGTGCCATCTTTGTTTGACTTCTCAAGCCCTAGGCCTAATTCACAGAAGAACTTGGTGaagaagccaactgatccagctGTCCAtatcaatgaaaatgaaaaggaACAATGCAATGATAAGAATTCTGACCTTCttttctgttgcaaaatatgtggaAAGTTTTTTTCCAAAGCCTTTGAGCTTGAGAGACATACAGATATTCATGCAGACGACTTTCCATTTACATGTGAAGTTTGTGGAAAAACTTTCCTTGATAGAGACCGTCTCAATAGTCACTTACTGAATCACAAACGTTTTTCTTGTAAAAAGtgtggaaaaaaatattcaagaaaaaTTGATGTAAAGAGACACATTCCTTTATGTAGCCTGTATCCTTGTGAAGTATGTAAAAAGTCTTTCTCCACAAAGTGTGAACTGAAGAGGCATATACATAAAGGACATCGGTACTCATGTCAAGCATGTAGAAAATCTTTCAGTCAGAAAGACCATCTAAAAGTTCACATGCGTGTCCACAAAGTCTTTTCCTGTGAAGCTTGTGGAGACAAGTTTTCTCAGAAATCTGATTTCAAGAAACATAACAGTACCTGTAAAGTGTTTTCTTGTAATGTTTGTGGAAAAACTTTCACTGAAAAGGACAATCTTGATACTCACATGTCCATTCATCCTTTTTTGTGTGAAATGTGTGGAGACATTTTCACTTCCAAAATCAGTTTCAATAATCACATGACTATTCATAGTGGTCAGTATTCATGCAAAGTGTGCAGGAAATCATTCGCTCAGAGAACCCATCTCACTAGCCATGAGCTCATTCACAAGAATATTTGCTTTCCATGCAATTTATGTGAAAAAACTTTCTCACGAGAGTATGATCTCAAGAGACACGTGCTCATTCACACAGGCGATCTTCAGTTTTCTTGTGAAATTTGTGGAAAATGTTTCACACGAAAGAGCAGTCTGAATGTTCATTTGGATATTCACACAGGTTCTCGCTTAAAATGTAAAGTGTGTGGAAGAACTTTCAAATCAGAAACTAGTCTCATTGAACATGTGGGTAGTCACAAATGTTAA
- Protein Sequence
- MVASCSAYNCTNRYKNGSGVSFHRFPLQNPEMVDKWLLAIKREKTFVPTQHSKICSVHFKDSDFWKCRPDGNKILKDDVVPSLFDFSSPRPNSQKNLVKKPTDPAVHINENEKEQCNDKNSDLLFCCKICGKFFSKAFELERHTDIHADDFPFTCEVCGKTFLDRDRLNSHLLNHKRFSCKKCGKKYSRKIDVKRHIPLCSLYPCEVCKKSFSTKCELKRHIHKGHRYSCQACRKSFSQKDHLKVHMRVHKVFSCEACGDKFSQKSDFKKHNSTCKVFSCNVCGKTFTEKDNLDTHMSIHPFLCEMCGDIFTSKISFNNHMTIHSGQYSCKVCRKSFAQRTHLTSHELIHKNICFPCNLCEKTFSREYDLKRHVLIHTGDLQFSCEICGKCFTRKSSLNVHLDIHTGSRLKCKVCGRTFKSETSLIEHVGSHKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -