Bger016689.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000890.1:262089-273460[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4e-05 0.0023 18.9 5.2 1 23 105 127 105 127 0.98 2 20 3.1e-05 0.0018 19.3 0.1 2 23 191 212 190 212 0.96 3 20 0.00057 0.033 15.3 1.5 2 23 223 244 222 244 0.94 4 20 0.19 11 7.3 0.6 1 23 250 273 250 273 0.90 5 20 0.00035 0.02 15.9 1.6 2 23 278 299 277 299 0.97 6 20 0.00019 0.011 16.8 0.1 1 20 307 326 307 328 0.93 7 20 0.0003 0.017 16.2 0.3 1 23 336 358 336 358 0.95 8 20 0.0021 0.12 13.5 1.9 1 23 364 386 364 386 0.95 9 20 0.0014 0.081 14.0 1.2 1 23 392 414 392 414 0.93 10 20 0.043 2.5 9.4 1.4 1 23 420 442 420 442 0.98 11 20 0.0015 0.089 13.9 0.2 1 23 864 886 864 886 0.98 12 20 0.0012 0.069 14.3 7.4 1 23 927 949 927 949 0.98 13 20 0.0039 0.23 12.6 4.5 2 23 958 979 957 979 0.94 14 20 0.037 2.1 9.6 1.8 1 23 985 1008 985 1008 0.96 15 20 5.4e-06 0.00031 21.6 1.9 2 23 1013 1035 1012 1035 0.94 16 20 3e-05 0.0017 19.3 0.1 1 20 1043 1062 1043 1064 0.94 17 20 0.0025 0.15 13.2 0.1 1 23 1072 1094 1072 1094 0.95 18 20 0.0022 0.13 13.4 1.7 1 23 1100 1122 1100 1122 0.95 19 20 0.00053 0.031 15.4 1.2 1 23 1128 1150 1128 1150 0.93 20 20 0.052 3 9.1 1.2 1 23 1156 1178 1156 1178 0.98
Sequence Information
- Coding Sequence
- ATGACATCAGCCAATAATATTGGCAGAAAAAACAATAAATCACTTGAAGATGAAGTAgatgaaaatacaaattttaacccTGCcaattttttaagtataacttacaatgaaaatgaaaacaccactaacagaaatgcTGAGAGAAGAAAGCCTCCAACAGAAAAAGATAATTTTCATTCCACATTGGACAATGATGCTGAAGAAAAtgattattatagtatattacaaaaaaggaATCCAAGGGTGGCTACACTTCAGGCATCATCGCACCAGAGTCATAATAAACGCCCCATTAATTTAGAATCGGATCATTATAGTTGTACATTCTGTGAcaaatatttcattcaaaaacATTTATTGAGACGTCACATGAAACTACACAGTTCTAATGTGGAGAACAATGACAGAGATTTAGTAGTCCAGCTATCGAAGGAAATTAAAAAGGGAGAGGTTGATGGAAACAGCGCTGAGAAATTGTACTTTTGTGATATATGCGGCATTGATTGTAAATGTAAATCTTTTATTGCTCAGcataaaaaaatccataaaacACAGGAGACAAAATCATTATCTTGTCCCATATGTGAGAAAGTGTTCAAATTCAATTCTCTACTAATAAATCATGTTGAAAGTCACAAAACCAAAGTAAAGATCAAGAAGTCCTTATCATGTCATATTTGCGGAAAGAAATACACAAAAATTGGTAGTCTTAATAAACATGAACTTCAGCATGAAGGAAAAGGAACATTTCGATGTCGCCCTTGCGGAGAGATGTTTACCACAGAAGCTGAAAGGACTAAACATCGTgatgaaaaacatgaaaaaccATGGAAATGTGAAATCTGCAGTCATATGTTTGCCACAAAAGAAAAACTTAATACTCATTTAAAATGGCATGAAAGCAAAGAAACAGAagtgtttatttgtaatgtttgcggtaaagaatttaaattaaaagtgaaTCTCAAAGTTCATGTAGAAAGTCGCTGTGGCACTGATCCTCAACATGTATGTAATGTTTGTGGCAAAGCCTTCATGACGAGAGGAACGCTTGTCACACATGCTCTTCTTCATACAGGAGAGAAAACATTTCTTTGCAGATTTTGTGGCAAGAATTTTCGTCTGAAAGTAGAAATGCAGCGGCATGAACGATCTCACACTGGTGAAAAACCATTTGTATGTAAAGTTTGTAGCAAAGCCTTTGCTCATAGAGAGAGCCTTGTTACGCATAACACACTCCATACAGGTGTACGTCCATATATGTGTGAAGCTTGTGGTTCTACCTTTTCGTGTATTGGGAATctcattaaacacagaaaaactcATCGTAATAGATGTTCCTTAGTCACTTCGTCAAtgacaaataaaactaaaatcaaGTCCAATGCCACTCAAATAGGAATTCATGAAAAACATACAACAAAAAATAAGTCATCTCCTATAATGGGGCATATGAATCCTGTTGAACCCCAGAAGCCAGTTAATGATACTGTAATTCAAGATGTAGTACCAACCATTTCTGGAAGCTATTATAATTACAGAAATTCAAATTATGATGAGAATCATGATTGGATTTCTCCAATATATGGTAATAGTGAGCAAACAATCGATCAGATTCCAGCAATAGTGGACAGATTTCATCAAGTTTCTGATTTTCATCCCAGTAACATTGAACGGAACATGAAAACttctcAATTGTACTGGAGTGGAAATAATATTGTGAGCatacatccagaaagtatgcAGTCATTTGGAGTGGGTAGTGCAGTTTCCAAGGAACCAAAGTCTGATACAAGATGTCTTCCATATCCTTGTTCCTCTGATGGATTACTTGCCTATAATGGAAAATCATTCATTGGCAATTTCTTCCAAAACTTTGACAATCATAGAGTTCAGAACTATCAAGAAGAAAAATATTCTCATGATTCTAGGCTCCAAAATTCATATACcagtaatgaaaaatattcttgtaACCCGAAAGTCACACCTGATGTTTTCCAGCCTATTGATTTTAAAACATTGGAGTCTGTTGCCCAGAACACTATCTCTCCATTAAAGGATTCGGTGTTTAATACCATTTCTAGTTGTGGCAATCCAGTGTCTCAGAGTGCAGTGCTTGCTtcaattacaaagaaaaataattcttctGATGATATTGCTAGTGTTAATGATGCTGTATTTATTGGATCACATTTTACAGTGGATGGTGAAGGTAGTAATGTAAAATCAGAAGATTTTCATCTTaatcaaaaaaataatatatcagaACCTATTCCTGGCAGTGAACACCAACAAAATGATGAATTATCAAACTTTGGATCTCCTATTAATAATGACTCAGAAACAGATGAATCAGAAAATGAAACTACCTCAAAAATGTCTTTGGATCAAAGCACATATATTAAATCAGAAACAGAAAATGCAATAGAAACAAAAGCAACGGATAATAAAATTTCTTCAACAGCAGAGACTTCACAGAAAATGCCTCATGATCGGAAACAAAAATATCCTGCTAAATGTGATGTAATTGTCGAACAGCTGGAAACCGATTCTGCTTGTAAATTTTCTGCTAGTAAACCACAAATTCAGTTTTCATGTGAtttgtgtaaattaatttttgctcaagaaaatttattaaatgaacaTATCCAATCTCATAAAATACAAAAGGAAGATGAGAAATCAATAGATACTGATGAAGATGAGCCATTGAACAAACGTTTACAACGCATCTTGGGAAAACTTAATGAAAACAGTTCAGATATAGTGCCAAAAAAATTCCCTTGCCAGTATTGCAATGAGCATTTTGATCATGTTTCACATTTAAATCGCCATAGAAAAAGTCATTCATTAGATGAGAAAGCAGCAACACCATGCCGACATTGTGGTAAGAAATATACCAATAAAGCATGCTTAATAAAACATGAATCTCAGCATATAAgtaatggaatttttaaatgtgGACAGTGTGGCGATGGCTTTAATTCAAAACAAGAATACCGATCACATCGAACAAAGCAACATGGAAAACAGTGGAGTTGTTCAGAATGCCAGCGTTCATTTTCCAACTCTAGTAATCTCAAGAATCATTATAACAACAAACATCTTGGTCGCGAAGCTAAGTCATATGCTTGTAACATTTGTGGAAAGTTATTCAAACAAAAAGGTAATCTAAAAGTTCATGTTGATAGTCGCTGTGGTTCAGAGCCACGACATGTGTGTAACATTTGTGGCAAAGCATTCATGAGTGGTGGTTCTCTTGGCACTCATCTCCTTCTGCATACTGGGGAGAAAACTTTCTTATGCCGTTTTTGTGGTAAAAGCTATCGTCTTAAAGTTGAAATGCAACGCCATGAACGATCACATACAGGTGAAAAACCTTTTGTGTGTAAAGTGTGTAACAAAGCATTTGCTCATAGAGAAAGTCTTGTCACACACAATACTCTCCATACAGGAATTAGACCTTACATGTGTGAGGCATGTGGGTCCACATTTTCATGTATAGGAAACCTAATTAAACATAGGCAGACACATAATAGAAGATGCGATGTTACTTAA
- Protein Sequence
- MTSANNIGRKNNKSLEDEVDENTNFNPANFLSITYNENENTTNRNAERRKPPTEKDNFHSTLDNDAEENDYYSILQKRNPRVATLQASSHQSHNKRPINLESDHYSCTFCDKYFIQKHLLRRHMKLHSSNVENNDRDLVVQLSKEIKKGEVDGNSAEKLYFCDICGIDCKCKSFIAQHKKIHKTQETKSLSCPICEKVFKFNSLLINHVESHKTKVKIKKSLSCHICGKKYTKIGSLNKHELQHEGKGTFRCRPCGEMFTTEAERTKHRDEKHEKPWKCEICSHMFATKEKLNTHLKWHESKETEVFICNVCGKEFKLKVNLKVHVESRCGTDPQHVCNVCGKAFMTRGTLVTHALLHTGEKTFLCRFCGKNFRLKVEMQRHERSHTGEKPFVCKVCSKAFAHRESLVTHNTLHTGVRPYMCEACGSTFSCIGNLIKHRKTHRNRCSLVTSSMTNKTKIKSNATQIGIHEKHTTKNKSSPIMGHMNPVEPQKPVNDTVIQDVVPTISGSYYNYRNSNYDENHDWISPIYGNSEQTIDQIPAIVDRFHQVSDFHPSNIERNMKTSQLYWSGNNIVSIHPESMQSFGVGSAVSKEPKSDTRCLPYPCSSDGLLAYNGKSFIGNFFQNFDNHRVQNYQEEKYSHDSRLQNSYTSNEKYSCNPKVTPDVFQPIDFKTLESVAQNTISPLKDSVFNTISSCGNPVSQSAVLASITKKNNSSDDIASVNDAVFIGSHFTVDGEGSNVKSEDFHLNQKNNISEPIPGSEHQQNDELSNFGSPINNDSETDESENETTSKMSLDQSTYIKSETENAIETKATDNKISSTAETSQKMPHDRKQKYPAKCDVIVEQLETDSACKFSASKPQIQFSCDLCKLIFAQENLLNEHIQSHKIQKEDEKSIDTDEDEPLNKRLQRILGKLNENSSDIVPKKFPCQYCNEHFDHVSHLNRHRKSHSLDEKAATPCRHCGKKYTNKACLIKHESQHISNGIFKCGQCGDGFNSKQEYRSHRTKQHGKQWSCSECQRSFSNSSNLKNHYNNKHLGREAKSYACNICGKLFKQKGNLKVHVDSRCGSEPRHVCNICGKAFMSGGSLGTHLLLHTGEKTFLCRFCGKSYRLKVEMQRHERSHTGEKPFVCKVCNKAFAHRESLVTHNTLHTGIRPYMCEACGSTFSCIGNLIKHRQTHNRRCDVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -