Bger013015.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blattella germanica
Gene Symbol
-
Assembly
GCA_003018175.1
Location
PYGN01000535.1:20525-32952[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 2.8e-05 0.0016 19.4 4.7 1 23 124 146 124 146 0.98
2 12 2.2e-07 1.3e-05 26.0 1.3 1 23 152 174 152 174 0.99
3 12 5.8e-07 3.3e-05 24.7 0.4 1 23 180 202 180 202 0.98
4 12 2e-07 1.1e-05 26.2 4.2 1 23 208 230 208 230 0.99
5 12 7.8e-06 0.00045 21.1 4.4 1 23 236 258 236 258 0.99
6 12 0.0001 0.0058 17.6 0.4 1 23 263 285 263 285 0.98
7 12 4.3e-07 2.4e-05 25.1 1.7 1 23 408 430 408 430 0.99
8 12 3.7e-07 2.1e-05 25.3 1.9 1 23 436 458 436 458 0.99
9 12 1.8e-06 0.00011 23.1 1.1 1 23 464 486 464 486 0.98
10 12 1.8e-06 0.0001 23.1 1.5 1 23 492 514 492 514 0.98
11 12 0.00013 0.0072 17.3 2.0 1 23 520 542 520 542 0.99
12 12 5e-06 0.00029 21.7 1.2 1 23 548 570 548 570 0.98

Sequence Information

Coding Sequence
ATGGAGTCTGCATCAGGAGAAGAAACAGATATGAAGGTCATACAAGAagaaaatattccaaattttgaaacttttGTGGTGAAGGAAGAGGAAAAGGCTCCAGATAAGGAGAACGAGTATGACGTACCAGATACAGAGCCTACTATTAAGATAAAAGAAGagcCTAAAGGAGATGATGACAACATTGAGCCATTGTTTTTCCTGGAAGTAAAGACAGAAATAGAAAATTGTGATGAAAAAGACGAAACAGATAAAAGACAGGAGAATGATAATTCATCTGTTTTGACCGACAAGTCCCAATGTTCTAAAATTTTGAGTGCTGCCTTAACAAAGAGTAGCACTGAAGATAAGCCTCAGAGACCCAGAAACTATTTTTGTGACTTATGCAACAAGGCATTCATGCAAAAAAGTCATCTTGTTGTACATCATCGCACACATTCGGGATTACGACCGTATCAATGTACCGTGTGCAAGAAAGGATTCAAGCAAAACAGCGACTTAACTGTGCATTACAGAATACACACCGGGTCACACCCATATGAATGTGAAGTGTGCAAGAAGGCATTTACGACGAGTAGCGACTTAAATGTTCACAACCGCATTCACACGGGTGCTCGACCTTATGAGTGTAAGATATGCAAGAAAGCTTTTGCAAGAAATACACATCTCACACGGCACTATCGTACACATACAGGAGCAAGACCCTATAAGTGTAAAGTATGTAGCAAAGGCTTCATGACTTCTACTCATCTCAACCGACATTACCGGATTCATTTTGTTGGACCATACAAGTGTGCTATATGTGAAAGAGAATTTAGAGACAATAACACGTTaatatcacattccaaagttcaTGAAGGGCTAGAAAGACTGAAGGGGTTATACGAGACAGAGAGAAAGGATAATCCTGCAGAACCGAAGATTGAGTTGCAAGATGAACTGCCTAacatgaaaccagatataaaggAAATCTTTGTTAAGGACAAACAGATTAGCAATGAAATGGATGTGAAGGAAGTCCCGGTTGTGGAAACTACAGCCTTTATGCAGGTGAAGGTGGAATGCCAGACTGCCGATATTGATGTGAAAACTGAAAATGTATGCAACGACAAGACACAGACTATTTCCAAAGGCGAGTACTGCACTCACATTCATACTCGACTTTTTGAAGATGAAGTATGCAAGAGGTGTTCTACAGTGGAGGAAAAGAAAATGCGTCCGTACCAGTGCAACTTGTGTGGTAAGCGTTTTGCTGAAAAGAGAAACTTGAACTTGCATTACCGTACCCACACTGGTTCCCGACCATATAAGTGTGATGTATGCGACAAAAGTTTCTCTCAGAAGAGTATTCTCACCACTCACCAGAGAACACACACTGGCTTCAAACCTTTTGAATGtgatgtgtgtaataaactgttCACTCAGAGCAATGATCTAACACGCCATTATAGGATACACACGGGAGCAAAGCCTTATGTTTGTGATATTTGTAACAAAACATTTTCACAAAGGGGAGGTCTCACATTACATCATCGATTGCACACAGGAAGTCGACCCTATCAGTGTGAGCTTTGCATGAAAGCATTCACAAGCAAGAGTCGCCTTACAATTCATTTTCGAACTCATACAGGTGCCCGACCGTATGAATGTGATATCTGTAAGAAAAAATTCAGCCGTAAAGAAATATTGACCAGACATATGTCAGTGCACAGAAAGAGTGTGCCAgtactataa
Protein Sequence
MESASGEETDMKVIQEENIPNFETFVVKEEEKAPDKENEYDVPDTEPTIKIKEEPKGDDDNIEPLFFLEVKTEIENCDEKDETDKRQENDNSSVLTDKSQCSKILSAALTKSSTEDKPQRPRNYFCDLCNKAFMQKSHLVVHHRTHSGLRPYQCTVCKKGFKQNSDLTVHYRIHTGSHPYECEVCKKAFTTSSDLNVHNRIHTGARPYECKICKKAFARNTHLTRHYRTHTGARPYKCKVCSKGFMTSTHLNRHYRIHFVGPYKCAICEREFRDNNTLISHSKVHEGLERLKGLYETERKDNPAEPKIELQDELPNMKPDIKEIFVKDKQISNEMDVKEVPVVETTAFMQVKVECQTADIDVKTENVCNDKTQTISKGEYCTHIHTRLFEDEVCKRCSTVEEKKMRPYQCNLCGKRFAEKRNLNLHYRTHTGSRPYKCDVCDKSFSQKSILTTHQRTHTGFKPFECDVCNKLFTQSNDLTRHYRIHTGAKPYVCDICNKTFSQRGGLTLHHRLHTGSRPYQCELCMKAFTSKSRLTIHFRTHTGARPYECDICKKKFSRKEILTRHMSVHRKSVPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-