Bger027896.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000264.1:1031217-1038229[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0014 0.078 14.1 3.2 1 23 142 164 142 164 0.97 2 21 0.0013 0.077 14.1 0.4 1 23 168 190 168 190 0.98 3 21 0.00087 0.05 14.7 3.3 1 23 193 215 193 215 0.92 4 21 1.1e-06 6.1e-05 23.9 0.3 1 23 221 243 221 243 0.98 5 21 0.00011 0.0065 17.5 0.9 1 23 261 283 261 283 0.97 6 21 2.6e-05 0.0015 19.5 3.0 1 23 289 311 289 311 0.95 7 21 0.013 0.75 11.0 4.9 1 23 317 339 317 339 0.96 8 21 0.00014 0.008 17.2 0.1 1 23 345 367 345 367 0.96 9 21 1.2e-05 0.00071 20.5 2.6 1 23 373 395 373 395 0.98 10 21 5.7e-05 0.0033 18.4 0.6 1 23 401 423 401 423 0.98 11 21 0.026 1.5 10.1 0.9 1 23 429 451 429 451 0.95 12 21 0.00026 0.015 16.3 5.9 1 23 457 479 457 479 0.98 13 21 0.00011 0.0063 17.5 5.4 1 23 485 507 485 507 0.98 14 21 0.00022 0.013 16.6 0.2 1 23 694 716 694 716 0.96 15 21 0.0025 0.14 13.3 1.3 1 23 720 742 720 742 0.99 16 21 0.00092 0.053 14.6 0.5 1 23 748 770 748 770 0.96 17 21 0.0026 0.15 13.2 1.7 1 23 776 798 776 798 0.95 18 21 1.1e-06 6.1e-05 23.9 1.4 1 23 804 826 804 826 0.97 19 21 4.5e-05 0.0026 18.8 0.4 1 23 832 854 832 854 0.98 20 21 2.4e-06 0.00014 22.8 0.5 1 23 860 882 860 882 0.98 21 21 0.17 9.9 7.5 4.1 1 20 888 907 888 909 0.93
Sequence Information
- Coding Sequence
- atgactgaaagttgtgtacaatttcagaaaatatgtcgTTTGTGTTTCTTTGGAGATGGTACAACCTCAATATTTGATTACTGTGATGCAGATTGCTCCTTGaggcaaaaaattaatttttgcctTTGTTTAGAGatTTCACAGGAAGATGGAATGCCACCTCTCATCTGTGAAACCTGTCTTTGTCAAATTAAGCAATTTTATGGCTTCAAACAGACCTGTGAAAAAGCCAATGTGAAGTTGCGAGAACATCTTAAAAATATGAATCAGGAATTCATAGAGGTTAAGAACGATGCAATCTGTGATGATGGTGAGATAGCAGATGATAACTATAGTGACAAAGCAGATGAATTGTTTCTGGAAAATTGCAAAGAAGTAAAGAAGTGCGAAATTGATAATATCATAGACGTGAAGACTGAGGCATTCACTTGCAGAACTTGCCTAAAATCATTCTCAAAGTCAACATACTTAAAAAAACATGAAGCTTCACATTGCAAATCTTACATTTGCAGCGAGTGTGGGAGTAACTTTACAAATTCAAAGGAAATGTCTGTGCATGCAAAAAGCCATATGACTTTTTTATGCAGACACTGTTCAAAGTCTTTTACAAAACAGGTTTACCTTAAAAGACACGAAGTGGTCCATACAAACATACGACCTTTCATTTGCACAACTTGTGGAACTTCATTTTCGAGGACAGGGGACCTTGCCAAACACATAAGAATTCATTCTAaggacaaaattgaaaatttgatgcCTGCACAAGGCTCAGTTGTAGGTTTTTCCTGTCCGATCTGCTTGCGGCAGTTTACGAGAGAGTACTATTTGAAACAGCATCAAGTCATACATGGAGATAAGACTTCATATTTATGTGAGCATTGTGGTAAGTCATTTTGTCGTAGAGCAGCATTAACCCAACATAAAGCCATTCATAGCACAATCCGATCGCATCATTGTAATGTCTGCAACAAAACATTTGCATTTCTCGGACGACTCAAGGAACACAAACGACTTCATGCCGTTATAAAAGAGTATTTGTGCAATGTCTGTGGGAAACCTTTCGGCACTAAAGAGGGCTTACTGGGACATGAACGAACACATAGTGGTGAAAAGCCGTTTTCCTGCACAGTTTGTAATAGAAGTTTTACAGCTTCATCAAATTATCGGACACATATGAAGCAGCATATTGAAGGAAAAAGATTTCCATGTACGTTATGTGACAGTGCATTCTATACTAAGTCTGGTCTGGAAAGACATGAGCGTAAACATGCTGGAATTAAGTCTTTTCAgtgtgatttatgtagtgttgcATTCTATACCAAGAGAGAAGTCGTTAGGCATAAGCTGTTTCATCTTGGAAACAAAAGATTTTCTTGTGATAAGTGTAATAAGACTTATTATGAACGACATCATCTTGCAATCCACCAACGAACTCATTCTGGAGAAAGACCCTTTTCATGTAGTAATTGTAACAAATCATTCTTTGAAAGGTCAAAGCTCAAAAGACATATGCACATTCATGTTAACAATTGCACAAATAAAATGACTTTTTCAAATTTATGTCGTTTGTGCTTAATAAAAACGGGCACAATGtctgaaatatttaataatgatgacaacaattttaaaattgctgaaaaaattaaagcATGTGTCTCAATTGAGGTAACTGCTAGAGATGGTCTTCCACAGCAAATTTGTAACAAATGCCTTCATCGAGTGAATAAATGGTATTCATTTCGAGAGGTGTGTAAGAATTCTGATGAATTTCTACGTACACACATTAAAGAAGAACAACATTGTAGACCTAGTAGTTCTACAATCATTGAAGAGGAAGTATTGCCCTTGGAATCAAACAAATCAATTCCACAATCGAGCAATGCGACTGCAAGCTGCTGCAATAAAGGCAAGCACCCGTGTGTTGTTTTCCAAGCAGAAGATAAACAAATACCAGAAAGAGCATTCCCAGATAGCGAAATTGTGACAAATAAGACTTATCTCTGTAAAAGATGCAATAATTTGTATGCATTGGATATAAATCTCTCATTTCATATCTGTCACTGTGataaatccaagttatatgtctGTAATGTATGTGGGAAGGATTTCTCGACTTTGAAATTGATGCGATTGCATGCAGCTTCACATACTGGAAAATTTCAATGCCAAACTTGCGGTAATTATTTTTCAGCTGAATTACACTTAGAAGTTCACATACGTAAACACACGGGCCACAAACCTCATGCATGCCCCATTTGTGGAAAGACATTTATGTACGGCAACAGTCTTGTGTACCACCGTAATGTCCACAATGGAGAAAACTCCTTTGTTTGTGACATTTGTGGCCACAGGTCTTTCTCGAAAGGAAATTTTGAAAGACACAAAGCATCGCACACTAAGGTCAAACCTCATATGTGTGAAATTTGCGGGAAGTCTTTTACTGTAAATGTAGACCTCAAGAGACATAGACTTACTCATAGTAATGTTAAAAACTTTTCGTGTGATATTTGTGATAAGAAATTCAAAACTGCAGCCATCTTATCAAACCACCAAAGAGTCCACACTGGTGAACGACCATTCTCCTGTGATCTCTGTGGAAAGAGGTTTGCACGTAATGATGGTTTGAAGGAACATAGATTAACACACACAGGAGAGAAAAGGCATCGATGTTCCAGATGTGGGAAACAGTTTACTTGGTCCAAAGGACTACGAAAACATAAATGTGAACCCACCAACTTATAG
- Protein Sequence
- MTESCVQFQKICRLCFFGDGTTSIFDYCDADCSLRQKINFCLCLEISQEDGMPPLICETCLCQIKQFYGFKQTCEKANVKLREHLKNMNQEFIEVKNDAICDDGEIADDNYSDKADELFLENCKEVKKCEIDNIIDVKTEAFTCRTCLKSFSKSTYLKKHEASHCKSYICSECGSNFTNSKEMSVHAKSHMTFLCRHCSKSFTKQVYLKRHEVVHTNIRPFICTTCGTSFSRTGDLAKHIRIHSKDKIENLMPAQGSVVGFSCPICLRQFTREYYLKQHQVIHGDKTSYLCEHCGKSFCRRAALTQHKAIHSTIRSHHCNVCNKTFAFLGRLKEHKRLHAVIKEYLCNVCGKPFGTKEGLLGHERTHSGEKPFSCTVCNRSFTASSNYRTHMKQHIEGKRFPCTLCDSAFYTKSGLERHERKHAGIKSFQCDLCSVAFYTKREVVRHKLFHLGNKRFSCDKCNKTYYERHHLAIHQRTHSGERPFSCSNCNKSFFERSKLKRHMHIHVNNCTNKMTFSNLCRLCLIKTGTMSEIFNNDDNNFKIAEKIKACVSIEVTARDGLPQQICNKCLHRVNKWYSFREVCKNSDEFLRTHIKEEQHCRPSSSTIIEEEVLPLESNKSIPQSSNATASCCNKGKHPCVVFQAEDKQIPERAFPDSEIVTNKTYLCKRCNNLYALDINLSFHICHCDKSKLYVCNVCGKDFSTLKLMRLHAASHTGKFQCQTCGNYFSAELHLEVHIRKHTGHKPHACPICGKTFMYGNSLVYHRNVHNGENSFVCDICGHRSFSKGNFERHKASHTKVKPHMCEICGKSFTVNVDLKRHRLTHSNVKNFSCDICDKKFKTAAILSNHQRVHTGERPFSCDLCGKRFARNDGLKEHRLTHTGEKRHRCSRCGKQFTWSKGLRKHKCEPTNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -