Bger014694.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000209.1:1070627-1118160[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.01 0.58 11.4 2.1 1 23 82 104 82 104 0.98 2 19 0.00083 0.048 14.8 4.0 1 23 110 132 110 132 0.98 3 19 0.00022 0.013 16.6 3.7 1 23 138 160 138 160 0.98 4 19 2e-06 0.00012 23.0 0.9 1 23 166 188 166 188 0.98 5 19 1.3e-05 0.00078 20.4 3.9 1 23 195 217 195 217 0.98 6 19 2.4e-05 0.0014 19.6 3.5 1 23 226 248 226 248 0.97 7 19 1.2e-06 7e-05 23.7 0.4 1 23 254 276 254 276 0.98 8 19 3.6e-05 0.0021 19.1 0.2 1 21 282 302 282 303 0.97 9 19 0.14 8.2 7.7 2.9 1 19 307 325 307 328 0.94 10 19 0.0043 0.25 12.5 0.8 1 23 334 357 334 357 0.96 11 19 0.2 12 7.3 0.4 1 17 363 379 363 380 0.92 12 19 0.00052 0.03 15.4 1.5 1 23 780 802 780 802 0.98 13 19 4.1e-05 0.0023 18.9 0.4 1 23 808 830 808 830 0.97 14 19 2.2e-06 0.00013 22.9 3.7 1 23 836 858 836 858 0.98 15 19 3.5e-05 0.002 19.1 2.7 1 23 864 886 864 886 0.97 16 19 0.00011 0.0065 17.5 3.3 1 23 893 915 893 915 0.97 17 19 1.8e-06 0.0001 23.2 1.7 1 23 924 946 924 946 0.98 18 19 7.2e-07 4.2e-05 24.4 0.7 1 23 952 974 952 974 0.98 19 19 4.5e-06 0.00026 21.9 0.9 1 23 980 1002 980 1002 0.98
Sequence Information
- Coding Sequence
- atgaaaatgatcgaaGGAGACCCAGAGGAATCAAGTGATGATGCTCAAGAAATAGATCAGTTTGTAGACTGTAAAGAGGAACTGAATTATGATTCTGCCGTGAAAGATGAGTTGATGGCTTGTTTAGAGGTTAAAATTCCTCTTGTTCACCAGAATTTATGTGAAGAACCAAATAAAGATTCTTCCTACCCAGTGGAAGATGTTGAACGTCATGACATGAAGTTAGTtgtgaataataaaaactattcttGTGAATTTTGCCACAAACGATTCTTATGGCCTTATCTACTTCAGAGACACATTCGTGTTCATACTGGTGAACGGAACTACCATTGTGATCTTTGTCAGAAGCGTTTGATTAACAAAACTTCGCTGAAGTCGCATATGCAGAAACACAAAGGTGATCGCAAATATCCTTGTAAAGATTGTAACAAATCTTTCTTTTGTAAAGCTGATCTAAATAGACACTATCGTGTTCATTCTGGAGAACGGCCTTATACATGTGACGTGTGCGGGAATAGTTTCTCACAGAAGAGCCATCTAGATGAACATATGCTCATTCACTTTGCAGGTCAGAGCAAATATACATGTGAAATCTGCCATAAAACCTTTACTCAAAAAGTAAGTTTATACAGACACAAATCTGTTCATTCTGCAGATACTGCGatgaattttcattcttgcagtGTTTGCAACAAATCATTCAAGCGTAAATATGCACTGGATCAACACCTAATGAGACACAATGGAATTAAACCTTTTTCTTGTGATGTATGTGGGAAGACTTTTGTAGAGAATGGAACTCTGAACAGACATTACCGAATTCACGCTGAGGATATATCTTACTCATGTGATATATGTGCCAAATCAttcaatttgaaagaaaatttaagaagACATCTTCGTGGAATTTGTTCATATTGTTGTAATATGTGTAGTGAATCATATTTCACTAGAGATCGCTTGAATAGGCATAGTTCTAGAGATGGAATTGCACTGTTTATATGTGATATATGTAAGAGGAATTATTTTACTGAGGCTGAGCTTTCCCTGCATATTAGACATATTCATCTGAATCAAAAGCCATTTCCTTGTAATGGGTGTGAGAAATCTTACGGAAAGAAACGTGACTTGaACACGCAAATGATCGAAGGAGACCTAGAGGAATCAAGTGATGATGCTCAAGAAACAGAACAGTTTGTAGACTGTAAAAAGGAACTGAATTATGATTTTGTAAATGTTTCTGCAGTGAAAGATGAGTTTAGCATGGAAATGGATGAAAAGGACCCAGGAGAATCAGGCAATGATGATCAAGAAACACAAGAACATATAGACCAGATAGAGGACCTGAAAGATGATTTGAACATGAAAATGATTGATAAAGACCCAGGGGAATCGGGTAATGTTGAACAAGAAACAGAAGAACATATACACCAGAGAGATGAAGTGAATTGTTTTGTGAATATTCCTGCAGTGGAGGATGACTTGAACACGCAAGTAATCGAAGGGGATCCAGAGGAATCAGGTGATGATGCTCAAGAAACAGATCAGTTCGTAGACTGTAAAATGGAACTGAATTATGATTTTGTAAATGTTTCTGCAGTGAAAGATGAGTTTAGCATGGAAATGGATGAAAAGGACCCTGGAGAATCAGGCAATGATGATCAAGAAACACAAGAACATATAGACCAGAAAGAGGACCTGAGAGATGATTTGAACATGAAAATGATTGATAAAGACCCAGGGGAATCGGGTAATGATGAACAAGAAATAGAAGAACATATACACCACAGAGATGAAGTGAATTGTTTTGTGAATAATCCTGCAGTGGAGGATGACTTGATGGCTTCTTTAGAGGTTAAAATTCCTCTTGTTCACCAGTATTTATACAAACAACCAAATAAAGATTCTTCTTATCCAGAGGAAGATGTTGAACAGAATGAAATGAAGAACACGCAAATGATCGAAGGAGACCTAGAGGAATCAGGTGATTATGCTCAAGAAACAGATCAGTTTGTAGACTGTAAAGAGGAACTGAATTATGATTTTGTAAATGTTTCTGCAGTGAAAGATGAGTTTaacatgaaaatGATTGATAAAGACCCAGGGGAATCGGGTAATGATGAACAAGAAACAGAAGAACATATACACCAGAGAGATGAAGTGAATAATGATTTTGTGAATATTCCTGCAGTGAGTGATGACTTGATGGCATGTTTAGAGGATAAAATTCCTCTCTTTCATCAGAATTTATGTGAAGAACCAAATAAAGATTCTTCTTATCCAGAGGCAGATGTTGAACAGAATGATATGAAGGTTGATCGGAATCATAAACGCTATTCTTGTGAATTTTGCAATAAACGATTCTTAATGCCCAGCCGTCTTAAGAGACACATTCGTGTTCATACTGGTGAACGGATGTACCATTGTGAGCTCTGTCAGAAGCCTTTTATTGACAAAGGTGCTCTGAAGTCTCATATGGTGATACACAAAGCTGATTGCAATTATCCTTGTAAAGATTGTGACAAATCTTTCTCGCGTAAATGTGTTCTAAATAGACATCGTCGTGTTCATTCTGGTGAAAGGCCATTTACATGTCAAGTGTGCAGGAAAAGTTTCGCACAGAAGCACCATCTAGAAGCTCATGTGGACATTCACTTTGCAGGTCAAGGCAAATATGCATGTGAAATCTGCAATAAAACCTTTACTCAAAAAGTATGTTTATACAAACATAAATCTGTTCATGCTGCAGATACTGCGATGAATTTTTATTCTTGCAGTATTTGCAACAAATCATTTAAGCGTAAATATGGACTGGATCAACACATAATGAGACACAATGGAATTAAACCTTTTTCTTGTGATGTATGTGGGAAGACTTTTGTAGAGAAAGGAACTCTGAAGAGACATTACCGAATTCACACAGAGGATATATCTTACTCATGTGATATATGTGCCAAATCAttcaatttgaaagaaaatttaagaagACATCTTCGTTTACATACTATAGATCGTCCATATTAG
- Protein Sequence
- MKMIEGDPEESSDDAQEIDQFVDCKEELNYDSAVKDELMACLEVKIPLVHQNLCEEPNKDSSYPVEDVERHDMKLVVNNKNYSCEFCHKRFLWPYLLQRHIRVHTGERNYHCDLCQKRLINKTSLKSHMQKHKGDRKYPCKDCNKSFFCKADLNRHYRVHSGERPYTCDVCGNSFSQKSHLDEHMLIHFAGQSKYTCEICHKTFTQKVSLYRHKSVHSADTAMNFHSCSVCNKSFKRKYALDQHLMRHNGIKPFSCDVCGKTFVENGTLNRHYRIHAEDISYSCDICAKSFNLKENLRRHLRGICSYCCNMCSESYFTRDRLNRHSSRDGIALFICDICKRNYFTEAELSLHIRHIHLNQKPFPCNGCEKSYGKKRDLNTQMIEGDLEESSDDAQETEQFVDCKKELNYDFVNVSAVKDEFSMEMDEKDPGESGNDDQETQEHIDQIEDLKDDLNMKMIDKDPGESGNVEQETEEHIHQRDEVNCFVNIPAVEDDLNTQVIEGDPEESGDDAQETDQFVDCKMELNYDFVNVSAVKDEFSMEMDEKDPGESGNDDQETQEHIDQKEDLRDDLNMKMIDKDPGESGNDEQEIEEHIHHRDEVNCFVNNPAVEDDLMASLEVKIPLVHQYLYKQPNKDSSYPEEDVEQNEMKNTQMIEGDLEESGDYAQETDQFVDCKEELNYDFVNVSAVKDEFNMKMIDKDPGESGNDEQETEEHIHQRDEVNNDFVNIPAVSDDLMACLEDKIPLFHQNLCEEPNKDSSYPEADVEQNDMKVDRNHKRYSCEFCNKRFLMPSRLKRHIRVHTGERMYHCELCQKPFIDKGALKSHMVIHKADCNYPCKDCDKSFSRKCVLNRHRRVHSGERPFTCQVCRKSFAQKHHLEAHVDIHFAGQGKYACEICNKTFTQKVCLYKHKSVHAADTAMNFYSCSICNKSFKRKYGLDQHIMRHNGIKPFSCDVCGKTFVEKGTLKRHYRIHTEDISYSCDICAKSFNLKENLRRHLRLHTIDRPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -