Basic Information

Insect: Blattella germanica
Gene Symbol: -
Assembly: GCA_003018175.1
Location: PYGN01000522.1:347391-355869[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00018 0.01 16.9 2.8 3 23 42 62 40 62 0.95

2 20 0.00035 0.02 15.9 3.3 1 23 68 90 68 90 0.95

3 20 4e-06 0.00023 22.1 0.2 1 23 96 118 96 118 0.97

4 20 0.00094 0.054 14.6 0.2 1 23 124 146 124 146 0.92

5 20 0.00022 0.013 16.5 3.1 2 23 152 173 151 173 0.96

6 20 0.00011 0.0066 17.5 1.1 3 23 183 203 182 203 0.98

7 20 0.0033 0.19 12.9 3.3 1 23 210 232 210 232 0.99

8 20 0.001 0.059 14.5 0.0 1 23 238 260 238 260 0.97

9 20 0.0035 0.2 12.8 0.4 1 17 266 282 266 283 0.93

10 20 0.34 20 6.5 3.5 1 23 295 317 295 317 0.97

11 20 0.0014 0.079 14.1 4.6 1 23 320 342 320 342 0.97

12 20 1.9e-07 1.1e-05 26.2 1.4 1 23 348 370 348 370 0.99

13 20 0.064 3.7 8.8 3.3 1 23 376 398 376 398 0.99

14 20 2.2e-05 0.0013 19.7 1.8 1 23 404 426 404 426 0.97

15 20 5.4e-06 0.00031 21.6 2.7 1 23 431 453 431 453 0.97

16 20 0.001 0.06 14.5 1.6 1 23 462 484 462 484 0.98

17 20 3.7e-07 2.1e-05 25.3 1.4 1 23 490 512 490 512 0.98

18 20 1.2e-05 0.00071 20.5 0.6 1 23 518 540 518 540 0.99

19 20 1.2e-06 7e-05 23.7 1.3 1 23 546 568 546 568 0.97

20 20 1.2e-05 0.00072 20.5 1.3 1 23 574 596 574 596 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00018	0.01	16.9	2.8	3	23	42	62	40	62	0.95
2	20	0.00035	0.02	15.9	3.3	1	23	68	90	68	90	0.95
3	20	4e-06	0.00023	22.1	0.2	1	23	96	118	96	118	0.97
4	20	0.00094	0.054	14.6	0.2	1	23	124	146	124	146	0.92
5	20	0.00022	0.013	16.5	3.1	2	23	152	173	151	173	0.96
6	20	0.00011	0.0066	17.5	1.1	3	23	183	203	182	203	0.98
7	20	0.0033	0.19	12.9	3.3	1	23	210	232	210	232	0.99
8	20	0.001	0.059	14.5	0.0	1	23	238	260	238	260	0.97
9	20	0.0035	0.2	12.8	0.4	1	17	266	282	266	283	0.93
10	20	0.34	20	6.5	3.5	1	23	295	317	295	317	0.97
11	20	0.0014	0.079	14.1	4.6	1	23	320	342	320	342	0.97
12	20	1.9e-07	1.1e-05	26.2	1.4	1	23	348	370	348	370	0.99
13	20	0.064	3.7	8.8	3.3	1	23	376	398	376	398	0.99
14	20	2.2e-05	0.0013	19.7	1.8	1	23	404	426	404	426	0.97
15	20	5.4e-06	0.00031	21.6	2.7	1	23	431	453	431	453	0.97
16	20	0.001	0.06	14.5	1.6	1	23	462	484	462	484	0.98
17	20	3.7e-07	2.1e-05	25.3	1.4	1	23	490	512	490	512	0.98
18	20	1.2e-05	0.00071	20.5	0.6	1	23	518	540	518	540	0.99
19	20	1.2e-06	7e-05	23.7	1.3	1	23	546	568	546	568	0.97
20	20	1.2e-05	0.00072	20.5	1.3	1	23	574	596	574	596	0.98

Sequence Information

Coding Sequence: ATGGATCCTTCAGCGCCAATGCAAACTTCTCCTGAGGAAATCAACTATTCTCATCAAGCTGCTATGGATCCGGAAAATGAAATCCCCCAGACAATTGAACCCACTAACACTGGTCTCATTTGTTGTGAATTTTGCAATAAACCCTTCGTAAGACCTTGTGACTTGAAGAGGCACATAGTATCACATATAAGTGGAAGGCCATATCATTGCAATATATGTTTACAAAATTTCAAGCGAAAAGAAGATCTGAAACGACATACTGATCTGCATTTAAAACCAAAGAACTTTGCTTGTGATATTTGTGACTATTCTACTATTCGAAAGGCCAATTTGGAAATTCACATGAAGAGGCACAACCGTGATTACAGATTTAAGTGTGAAATCTGTGGGAAAGGCTTCTACACCGCAACTCGGATGAGAGAGCATGAAGCTGCGCACAATGGCCAAAAGCTGCACTGTGAACTTTGTGGCAGAGCGTTCATGAAAAGGTGTAATCTTGTGAGCCACATGAGAGTTCATGATCCTGAGAGAATTTCACTGAACTTCTGTAATTTATGTGGAAAAGTCTTTCAGGACAACATCAGTTTTCAAACGCATCAAAGTACCCATATGAGTACCCAGGAGTTGTTTAAGTGCGGATTCTGTTCAAACTCTTACACCAGTAAAAGATCTCTTTCCCTCCACTATCGTTCCCATCCTAACGTGAAGCCATTCGTGTGCAACGTGTGTGGAGAGGAATATTCTAAAGAGTGGCAATTGATAGAACACGAGTTGGTACATACAAAAGAAAGGAAACATCGCTGTGCAGAATGCGGTTTGTGTTTCTCCCAACGATCTGCTCTGAATTGGTCCTTTGTGTTTTCTTCTAGGTATGCAAGTCCATTCTCGTGCCTCTCGTGTAGACTGACGTTCCAGTGCAGGTCGGAGCTCGCAAATCATATGAAGTCTCACAAGGCTCACAAGTGCCCATGTTGTGGCAAAGTGTACTCGCAACTGAACCGCCTCAAGAAGCACATGGTGACGCACAGCTCAGACCGGCCATTCAAATGTCAGATATGCTCCAAAGCGTTCAAGCGCAGCTATGAACTTAAAGGTCACATGAGGGTGCATTTTGGAGGGGAGGTCTACAAATGTGATGTCTGCGAATATACTACTATATATAAAGGAAGTATGCACCTACATAAGAAGCGGCATATGGGCGATGCCAAATTTCATTGCGAACAATGCAAAAAGGGGTTTTATAGCAACTCGGACCTGCAAGCGCACCTCTCAATACACTCTGGTTTGAAACATCATTGCAAAGTCTGCGGAAAAGGGTTCTCTCAGGAGGTGAATTTAAACCAACACCTCAAGATTCATGATCCAGAACGTAGTGACAAAATGTTTCATTGTGACATATGTGGCAAAGGCTACCTGTTCAAGAGCAAACTTATCATGCATATACGTAGTCATACGGGAGAGAAGAAATTTGTTTGTGATATTTGTGGAAAGTCCGTTACAACCACTAGCTCATTGAAACATCATATCCGTTCACATACTAATGAAAAGCCGTTCAAATGTGACGTGTGTGGGAAGGAATTCAGAGCTGCTAATTATCTCACCGTTCACAAACGATCCCATACCGGCGAGAGGCCACATGTATGTAAAGAATGTGGCAGGTCTTTTTCACAACGTACACCACTTATCGTGCATATGCGTTATCATACAGGCCAAAGACCTTATAAGTGTAGCATTTGTTCTAAAGGTTTTGTAACTCGTACTTTACTTATATCACATCAGAAATATCATGAATGA
Protein Sequence: MDPSAPMQTSPEEINYSHQAAMDPENEIPQTIEPTNTGLICCEFCNKPFVRPCDLKRHIVSHISGRPYHCNICLQNFKRKEDLKRHTDLHLKPKNFACDICDYSTIRKANLEIHMKRHNRDYRFKCEICGKGFYTATRMREHEAAHNGQKLHCELCGRAFMKRCNLVSHMRVHDPERISLNFCNLCGKVFQDNISFQTHQSTHMSTQELFKCGFCSNSYTSKRSLSLHYRSHPNVKPFVCNVCGEEYSKEWQLIEHELVHTKERKHRCAECGLCFSQRSALNWSFVFSSRYASPFSCLSCRLTFQCRSELANHMKSHKAHKCPCCGKVYSQLNRLKKHMVTHSSDRPFKCQICSKAFKRSYELKGHMRVHFGGEVYKCDVCEYTTIYKGSMHLHKKRHMGDAKFHCEQCKKGFYSNSDLQAHLSIHSGLKHHCKVCGKGFSQEVNLNQHLKIHDPERSDKMFHCDICGKGYLFKSKLIMHIRSHTGEKKFVCDICGKSVTTTSSLKHHIRSHTNEKPFKCDVCGKEFRAANYLTVHKRSHTGERPHVCKECGRSFSQRTPLIVHMRYHTGQRPYKCSICSKGFVTRTLLISHQKYHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -