Bger027291.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000522.1:541484-556943[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.3e-06 0.00025 21.9 3.2 1 23 11 33 11 33 0.98 2 20 0.00056 0.033 15.3 1.4 1 23 39 62 39 62 0.95 3 20 0.0065 0.38 11.9 3.7 1 23 69 91 69 91 0.97 4 20 0.0014 0.08 14.1 0.5 2 23 98 119 98 119 0.97 5 20 2.8e-07 1.6e-05 25.7 0.6 1 23 125 148 125 148 0.98 6 20 0.00011 0.0063 17.5 0.8 2 23 160 181 159 181 0.97 7 20 2.6e-05 0.0015 19.5 0.6 3 23 189 209 188 209 0.98 8 20 2.7e-06 0.00016 22.6 1.1 2 23 216 237 215 237 0.97 9 20 3e-06 0.00017 22.5 2.1 1 23 243 265 243 265 0.98 10 20 6.1 3.5e+02 2.6 0.0 1 10 271 280 271 290 0.79 11 20 2.7e-05 0.0016 19.4 2.4 1 23 321 343 321 343 0.97 12 20 0.00054 0.031 15.3 3.6 1 23 349 371 349 371 0.97 13 20 0.0033 0.19 12.9 0.2 3 23 379 399 378 399 0.97 14 20 0.00014 0.008 17.2 0.0 2 23 451 472 450 472 0.96 15 20 3.6e-05 0.0021 19.0 1.3 1 23 478 500 478 500 0.97 16 20 0.00011 0.0063 17.5 0.4 2 23 507 528 506 528 0.97 17 20 0.018 1 10.6 0.3 2 23 535 556 535 556 0.93 18 20 6.7e-05 0.0039 18.2 0.3 1 23 605 627 605 627 0.97 19 20 5.5e-06 0.00031 21.6 0.5 1 23 653 675 653 675 0.97 20 20 2.1e-05 0.0012 19.8 1.9 1 23 681 703 681 703 0.97
Sequence Information
- Coding Sequence
- ATGTCAGGGTTACGGACTGTATCGCGGGACTTCTCATGTGAGATGTGCTCCAAATCATTCACCTCGAAGAGGCTATTGAATCACCACATGCTGGTCCACACCAAGGAAAAACCCTTCTCGTGCGATGTGTGCGGGAAGAAATTCAATGAGAAGTACAAAGTAAAAATGCATGTTCGAGATAGGCATGAAACCCACGCCAAAGATCATGTCTGTAGTCTATGCGGTTATGCAACGACGCACTATAAGTATTTGCAGCAACACCTGGACAGGCACTTCAAGGATTACAAAGCGACTTGCGAAATATGCGGAAAAGGGTTTTATTCGGATTTTGCTCTAAAAGAGCATAAGTTTACGCATTCGggaaataaacagtataaatgtgaaatatgtgGTAAAGGCTATTCGTACAAGAACAATTTACAGGCTCATCAGAAGGTAAACCATCCAGAGTCTCAACAACAACCGTTACGGGCTAATCAGTGCGAAACTTGCGGAAAGACATTTGCTTATAGAACGTCTCTGTTGCTACATGAAAAATCTCATTCTGGTCAGAATGTAAACCTCTGTGACATTTGTGGCAAGTCACTCACTAGCAAAGAGTCGCTGAAAGCACACAAAAGACTACATACTGGCGAGAAGCCAATCGTGTGCCAAGTCTGCGGGAAGGCTTTCATAAGGCGCTGTAATTTACGGACACATATGGTTACGCATACGGGCGAGAGACCTCATAAATGTGATACCTGTGGAAAAACATTCACCCAGCGTCCAAGCCTTGTAGTGCATCTGCGTTATCATACTGGACAAAGACCATATGAATGTAGCGTTTGTAAAAAGGGAGTAATCGTTTTGTCAGAAGCGCTTCTTCATAGTGAAAAACCAGGCATCTTTGTTTCTAGGTGTACACCTGAAGAAAAGACCAGTGCAGACTTTGCAAACACGTtacagaaaatgatggaagttttTAAGTGCAATCGCTGTGGAAAAGTGTCTAGTTCGAAGAAATTGTTGAATCATCATATGGTGATCCACAGCGAGGAGAGACGTCATGTGTGCGGTGTCTGTGGGAAGAAGTTCAAGAGATCTTGCGATGTGGTTGTTCATAAGAAGACCCATACCATAGTAAAGGGAGAAATTTGTGATATATGTGGCTATGCAACTACACTTAAATCCTACTTGGATGTTCACCGTAAAAAACATTTTCTGGATTTTAAATGGAGtgtaaTCGTTTTCTCAATAGATAGAGCTCTTCTTCATAGTGAAAACCCGGAGATCTTTCTTTCTAGGTATACACTACAAGCAAAGACCGGTGCCAACTTTACAAACACATTTTGGGAAACGATGGAACTTGTTACATGTGATTCCTGTGGAAAAGTGTTTGGATCTAGAAAGCTGTTGGCTGCTCATATGGTAATCCACAGCGAGGAGAGGCTTCATGTGTGTGACGTATGTGGGAAGAAATTCAAGCGATCTTATGATGTTGTTGTTCATAAGAAGATACATGCACGAATGAAGGAGAAAGTTTGTGATATATGTGGCTATGCAACTTCACAGAAATCCTACATGGAGATTCACCGTAGAAGACACTTTCAGGATTTTAAAGGGAGATGTGAAATATGTGGAAAAGGATTTTATGCTGATTTCCAGCTGAAGCAACATAGTCTTCTTCACACTGATGAAAAACGTTTCAAGTGTGAGATATGTGATGGAGTGCTTCTTCATACTGAAAAACCAGGGATCTTTCTTTCTAGGTGTACGCCTGAAGAAAAGACCAGTGTCCACATTACAAACACGTTACAGAAAACAATTGAAGATTTTAGGTGTGATTCCTGTGGAAAAGTGTTTGGATCTATGAAACTGTTGTCTCGTCATATGGTGATCCACAGCGAGGAGAGGTGTACGCCTGAAGAAAAGACCAGTGTCCACATTGCAAACACGTTACAGAAAGCAAATGAAGATTTTAAGTGTGATTCCTGTGGAAAAGTGTTTGGATCTAAGAAACTGTTGTCTCGTCATATGGTGATCCACAGCGAGGAGAGGCGTCATGTATGTGATGTATGTGGGAAGAAGTTCAAGAGATCTTATGATGTAACTATTCATAAGAAGATCCATTCCCAAATAATTAAACTCGTATATATCAACAACTTACCTAATCTGAAGACTCGCCGGAATCACTGTCAGAACAGTCGGACTCCTCAAGATTGA
- Protein Sequence
- MSGLRTVSRDFSCEMCSKSFTSKRLLNHHMLVHTKEKPFSCDVCGKKFNEKYKVKMHVRDRHETHAKDHVCSLCGYATTHYKYLQQHLDRHFKDYKATCEICGKGFYSDFALKEHKFTHSGNKQYKCEICGKGYSYKNNLQAHQKVNHPESQQQPLRANQCETCGKTFAYRTSLLLHEKSHSGQNVNLCDICGKSLTSKESLKAHKRLHTGEKPIVCQVCGKAFIRRCNLRTHMVTHTGERPHKCDTCGKTFTQRPSLVVHLRYHTGQRPYECSVCKKGVIVLSEALLHSEKPGIFVSRCTPEEKTSADFANTLQKMMEVFKCNRCGKVSSSKKLLNHHMVIHSEERRHVCGVCGKKFKRSCDVVVHKKTHTIVKGEICDICGYATTLKSYLDVHRKKHFLDFKWSVIVFSIDRALLHSENPEIFLSRYTLQAKTGANFTNTFWETMELVTCDSCGKVFGSRKLLAAHMVIHSEERLHVCDVCGKKFKRSYDVVVHKKIHARMKEKVCDICGYATSQKSYMEIHRRRHFQDFKGRCEICGKGFYADFQLKQHSLLHTDEKRFKCEICDGVLLHTEKPGIFLSRCTPEEKTSVHITNTLQKTIEDFRCDSCGKVFGSMKLLSRHMVIHSEERCTPEEKTSVHIANTLQKANEDFKCDSCGKVFGSKKLLSRHMVIHSEERRHVCDVCGKKFKRSYDVTIHKKIHSQIIKLVYINNLPNLKTRRNHCQNSRTPQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -