Basic Information

Insect: Blattella germanica
Gene Symbol: -
Assembly: GCA_003018175.1
Location: PYGN01000287.1:28850-67277[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.1 3e+02 2.8 0.3 5 15 92 102 91 102 0.87

2 15 1.5e-08 8.4e-07 29.7 2.7 1 23 127 149 127 149 0.98

3 15 6.1e-07 3.5e-05 24.6 0.4 1 23 155 177 155 177 0.98

4 15 4.4e-08 2.5e-06 28.2 0.8 1 23 183 205 183 205 0.98

5 15 8.7e-08 5e-06 27.3 1.0 1 23 211 233 211 233 0.98

6 15 3.2e-06 0.00018 22.4 4.2 1 23 239 261 239 261 0.98

7 15 6.9e-06 0.0004 21.3 0.4 1 23 267 289 267 289 0.95

8 15 1.1e-05 0.00065 20.6 4.7 1 23 295 317 295 317 0.96

9 15 3.2e-07 1.9e-05 25.5 2.3 1 23 323 345 323 345 0.99

10 15 4.1e-07 2.4e-05 25.2 1.2 1 23 351 373 351 373 0.99

11 15 7.4e-07 4.3e-05 24.4 5.4 1 23 379 401 379 401 0.98

12 15 3.3e-05 0.0019 19.2 3.6 1 23 407 430 407 430 0.97

13 15 2.5e-05 0.0015 19.5 0.7 1 23 436 458 436 458 0.98

14 15 5.5e-06 0.00032 21.6 0.6 1 23 464 486 464 486 0.98

15 15 8.2e-07 4.7e-05 24.2 3.8 1 23 492 514 492 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.1	3e+02	2.8	0.3	5	15	92	102	91	102	0.87
2	15	1.5e-08	8.4e-07	29.7	2.7	1	23	127	149	127	149	0.98
3	15	6.1e-07	3.5e-05	24.6	0.4	1	23	155	177	155	177	0.98
4	15	4.4e-08	2.5e-06	28.2	0.8	1	23	183	205	183	205	0.98
5	15	8.7e-08	5e-06	27.3	1.0	1	23	211	233	211	233	0.98
6	15	3.2e-06	0.00018	22.4	4.2	1	23	239	261	239	261	0.98
7	15	6.9e-06	0.0004	21.3	0.4	1	23	267	289	267	289	0.95
8	15	1.1e-05	0.00065	20.6	4.7	1	23	295	317	295	317	0.96
9	15	3.2e-07	1.9e-05	25.5	2.3	1	23	323	345	323	345	0.99
10	15	4.1e-07	2.4e-05	25.2	1.2	1	23	351	373	351	373	0.99
11	15	7.4e-07	4.3e-05	24.4	5.4	1	23	379	401	379	401	0.98
12	15	3.3e-05	0.0019	19.2	3.6	1	23	407	430	407	430	0.97
13	15	2.5e-05	0.0015	19.5	0.7	1	23	436	458	436	458	0.98
14	15	5.5e-06	0.00032	21.6	0.6	1	23	464	486	464	486	0.98
15	15	8.2e-07	4.7e-05	24.2	3.8	1	23	492	514	492	514	0.98

Sequence Information

Coding Sequence: ATGATGGAGGTAAAAGAGGAACTGAAGCCAACATATAGTGATGATAAGAAATGGTTCACTCCTACGGATGTTTCAATTAAGGTTGAAAATTTGGAGGTGAAATGGGAAACAGAGGAAATTTATGAGGACAAGGCAACGTTGTCCTTATCACCAGGTCTGAAAACTGAAGAAAAAATACCGGATTTTACACCAGAGACTAACAACTGTAACTCTTCTGTAGAATTGAACAGGGATGATGAAACAGACAAAAAAATACAAACTGGAGAATTCGGGAAATGTTCTAAAACCTTTTCACAATCAGAACATCCACGTCAACAACTTCATGACATATGTATGACTCGTGATGTACATAATTGTGCTCAAACCACTAATActccatttcagtgtgaaatatgcagcaaAGCTTTCACTCAGAAAAGCCATCTTAATAGGCATATGAATATTCACACTGCCTTTcgtaaatatcagtgtgaaatatgcaacaaaacttTTACTCTCAAAAATGATCTTAATTGGCATATGGATATTCACAGTGGCAATCGTAAATATCAATGTGaaatatgtaacaaaagtttTACTTTGAAAGGTAATCTTAAAAGACATATGGATATTCACACTGGCATTCGTAAATaccagtgtgaaatatgcaacaaaagctTTAGTTTCAAAAGTTATCTTAATTGGCATATggatattcacagtgacattcgtaaatatcagtgtgaaatatgcaacaaaagtttTACTCTCAAATGTAATCTTAATAGACATATAAATTTTCACACTGGCATTCGTAAATATctgtgtgaaatatgcaacaaaagctTTTCTTTCAAAAGTGATCTTGATTTGCATATGGATATTCACAGTGCCATTcgtaaatatcagtgtgaaatgTGCAACAAAAGTTTTACTCTCAAATGTAATCTTAATAGACATATGGATTTTCACAATGGCATTcgtaaatatcagtgtgaaatatgcagcaaAGCTTTCACTCAGAAAGGTCATTTCAATTCTCATATGAATATTCACACAGCGATTCATATgtatcagtgtgaaatatgcaacaaaagtttTCCTCTCAAACAGTATCTCAAAAAACATATGAATATTCACAGAGGCATTTATAAttatcagtgtgaaatatgtagCAAAAGTTTTACTCACAAATGTAATCTTAATAGACATATGGATATTCACACTGGCATTcgtaaatatcagtgtgaaatatgcaacaaaagctTTACTTTCAAAAGTGATCATAATAGACATATGAATAATATTCACACTGGCATTcgtaaatatcagtgtgaaatatgcagcaaAACTTTTACTCTGAAATCTATTCTCAAAACCCATATGATTATTCATACAGACAATGGTgaatttcagtgtgaaatatgcaacaaaatttTTAACATCCAACGTTATCTTAAAATCCATATGAATATTCACAAAGCCATTcgtaaatatcagtgtgaaatatgcaacaaaaattttattcacaaagaTCACCTTAATTCACATATGAGTATTCACACATGA
Protein Sequence: MMEVKEELKPTYSDDKKWFTPTDVSIKVENLEVKWETEEIYEDKATLSLSPGLKTEEKIPDFTPETNNCNSSVELNRDDETDKKIQTGEFGKCSKTFSQSEHPRQQLHDICMTRDVHNCAQTTNTPFQCEICSKAFTQKSHLNRHMNIHTAFRKYQCEICNKTFTLKNDLNWHMDIHSGNRKYQCEICNKSFTLKGNLKRHMDIHTGIRKYQCEICNKSFSFKSYLNWHMDIHSDIRKYQCEICNKSFTLKCNLNRHINFHTGIRKYLCEICNKSFSFKSDLDLHMDIHSAIRKYQCEMCNKSFTLKCNLNRHMDFHNGIRKYQCEICSKAFTQKGHFNSHMNIHTAIHMYQCEICNKSFPLKQYLKKHMNIHRGIYNYQCEICSKSFTHKCNLNRHMDIHTGIRKYQCEICNKSFTFKSDHNRHMNNIHTGIRKYQCEICSKTFTLKSILKTHMIIHTDNGEFQCEICNKIFNIQRYLKIHMNIHKAIRKYQCEICNKNFIHKDHLNSHMSIHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -