Bger005374.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01009928.1:71-14099[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.49 28 6.0 3.9 1 23 55 77 55 77 0.96 2 18 2.6e-05 0.0015 19.5 0.1 1 23 86 109 86 109 0.94 3 18 0.00024 0.014 16.5 0.6 1 23 115 137 115 137 0.98 4 18 5.4e-06 0.00031 21.6 0.1 1 23 143 165 143 165 0.97 5 18 1.1e-06 6.1e-05 23.9 2.3 1 23 167 189 167 189 0.98 6 18 8.5e-06 0.00049 21.0 5.4 1 23 195 217 195 217 0.98 7 18 2.4e-07 1.4e-05 25.9 3.3 1 23 223 245 223 245 0.99 8 18 2.9e-07 1.7e-05 25.6 0.6 1 23 250 272 250 272 0.98 9 18 4.9e-07 2.8e-05 24.9 2.9 2 23 279 300 278 300 0.97 10 18 1.2e-07 7e-06 26.8 2.6 1 23 306 328 306 328 0.98 11 18 2.6e-06 0.00015 22.6 1.8 1 23 330 352 330 352 0.98 12 18 1.2e-07 7e-06 26.8 0.5 1 23 495 517 495 517 0.98 13 18 0.06 3.4 8.9 5.4 1 23 523 545 523 545 0.96 14 18 2.6e-06 0.00015 22.6 1.5 1 23 551 573 551 573 0.98 15 18 0.00028 0.016 16.3 5.8 1 23 579 601 579 601 0.97 16 18 0.00021 0.012 16.6 0.6 1 23 607 629 607 629 0.96 17 18 7e-08 4e-06 27.6 2.9 1 23 635 657 635 657 0.98 18 18 9.8e-06 0.00057 20.8 2.9 1 20 663 682 663 685 0.92
Sequence Information
- Coding Sequence
- ATGTGTGATATACTTATTAAAGAAgagaataatgtaatttttaaaaacaccTCAGAATCTCATGGAACATCTATAACACCAAATAATGAAGGCTTTACAGAAGAGCATGATCGAGAAACAGAAGCGGATGATGAACTATTTGTACTAAATAGTAACAGTTTACATGTTTGTGACATATGTAATAAAGTACTTCATTCAGGGAATGAACTGTATCATCATAAACTGAGCCATGAAGCCACTTCAGAAAAATGTTCATTCCCTTGTGAAATTTGTGGTAATTCTTTTCCACAGAAGAAATATCTTAATGAACATATGGAAGCTAATCATAAAATTATCATGAAATTTATCTGTGAAGTATGTGAGAAATCCTTTCTTGATAAAAAGTATCTTGATAAACATATGATAACTCACATGCCTAAGTTGTCATTTTCGTGCGACCTATGTGGTAGATCTTTTGCACGTAAGAGCAATCTTATTCCACATATGGATATTCATAAATATCCTTGTAAAGTGTGCAAAAAGTCATTTACTCAAACGAAATACCTTAATAGACATATGATCAGTCACTCAGAGGATTTTCCTTTTTCATGTGAAATTTGCAAACAGTCTTTCTCTCGGAGGTGCCACTTAAATAGGCATATGATTATTCATGCAGACGACCTTCCATATACATGTAATGTCTGTAACAAATCTTTTGCAAGGAAGGAACATTTCAATAGACATATTATTACTCATAGTAGTCCTGTGTTTCCTTGTGAAGTTTGTGACAAATCTTTCAGTCAGAAGGAACGTCTCGAGAGACACATGATTAAGCATACAGATGAACATCTAATCTATTGTGAAGTGTGCAACAAATCTTTCTCTAGAAGAGGTCATTTCAATAGACACATGTTGACACACAATGGTAAAAAGTCCTTTACATGTGAAATCTGCAAAAAATCTTTCTCTCAAAAGGAAAATCTTAATAGACACAAACTTACACACTCATTTAGATGTAAAGTGTGTAATAAATCTTTCTCAAAAGCAGAATATCTTTATTTGCACATGAATATGCACACAAATGATGATCACATATTTTCACAAGttGATATAAAGTGTAATTTTAAAGAAGAATCTGGAGAAATTTATGAGAAAGTGTTAAAACCCAATTCTACTGAAAGCAATTGGGTTAATGATGTTCCAGAACATTCTCAGATGTTGCCAACTGTCAAATTGGAATTGGAACCTGaggttTTAGTTCATGAAACTGAATATCCAGTTGTTCAATTTGAAGAAGGTAATGAATGTAATAAGAATTTAGGAGAGGAAGAAGAATTAGTGCGCCAGGATAACTATAGAGGTTTAAACTTCATTAAATCACAAGAAGAACATCCAAATGAAAATAAAGAttcaaacataaacatttttgCATACTCCAATATTTTGTATAATGAACCATCTCAAAACAGCAATTCAAAGAAGCAATCCACTGAAAATCTTCCTTTTCCTTGTGAAGTGTGTGAGAAACGTTTTGCTCAGAAGTCATTATTGAAAAGACATATGATTACCCATACAAATGATCGTCCACATTCTTGTGATGTTTGtggaaaacattttcttttaaagTACCATCTCACTGCTCATAAAACTATACATTCAAATGATCGACCGTATTCTTGTGATGTGTGTAATAAATCATTCTCTCAAAAAGGAGTACTGAGGAGACATAAGCGTCTTCACACAAATGATCATCCTTTTTCATGTGAAGTGTGTGGAAAAAGTTTTCTTCAGAGGTACCACCTTAAGACTCACATGCATTACCATTCAGGTGCAACACCATTTGCATGTGATGTGTGTGGAAAATCATTCTGTGAGAAAAGTATCCTGAATAGACATGCACTTATTCATTCAGCTGATTATCAATATTGTTGTGATTTGTGTGGAAAATCTTTTACTCAAAAGAGTAGTCTCAATACACACATCCGTATTCATGATGGAAATCGCCCCTATTCTTGTGAAGTGTGTGGAAAATCATTTTCAAGGAAACATCATCTAGATAGACATGCACCTACTCATTGGTGA
- Protein Sequence
- MCDILIKEENNVIFKNTSESHGTSITPNNEGFTEEHDRETEADDELFVLNSNSLHVCDICNKVLHSGNELYHHKLSHEATSEKCSFPCEICGNSFPQKKYLNEHMEANHKIIMKFICEVCEKSFLDKKYLDKHMITHMPKLSFSCDLCGRSFARKSNLIPHMDIHKYPCKVCKKSFTQTKYLNRHMISHSEDFPFSCEICKQSFSRRCHLNRHMIIHADDLPYTCNVCNKSFARKEHFNRHIITHSSPVFPCEVCDKSFSQKERLERHMIKHTDEHLIYCEVCNKSFSRRGHFNRHMLTHNGKKSFTCEICKKSFSQKENLNRHKLTHSFRCKVCNKSFSKAEYLYLHMNMHTNDDHIFSQVDIKCNFKEESGEIYEKVLKPNSTESNWVNDVPEHSQMLPTVKLELEPEVLVHETEYPVVQFEEGNECNKNLGEEEELVRQDNYRGLNFIKSQEEHPNENKDSNINIFAYSNILYNEPSQNSNSKKQSTENLPFPCEVCEKRFAQKSLLKRHMITHTNDRPHSCDVCGKHFLLKYHLTAHKTIHSNDRPYSCDVCNKSFSQKGVLRRHKRLHTNDHPFSCEVCGKSFLQRYHLKTHMHYHSGATPFACDVCGKSFCEKSILNRHALIHSADYQYCCDLCGKSFTQKSSLNTHIRIHDGNRPYSCEVCGKSFSRKHHLDRHAPTHW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -