Bger001124.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- VIPAS39_1
- Assembly
- GCA_003018175.1
- Location
- PYGN01001224.1:533998-597627[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.1e-07 1.2e-05 26.1 1.2 2 23 589 610 588 610 0.97 2 23 8.1e-05 0.0047 17.9 4.5 1 23 616 638 616 638 0.97 3 23 0.00019 0.011 16.7 10.1 1 23 644 666 644 666 0.98 4 23 0.03 1.7 9.9 3.5 1 15 677 691 677 693 0.95 5 23 1.2e-05 0.00067 20.6 1.7 1 23 833 855 833 855 0.98 6 23 0.0014 0.081 14.0 6.2 1 23 861 883 861 883 0.98 7 23 5.4e-06 0.00031 21.6 1.5 1 23 889 911 889 911 0.98 8 23 0.0047 0.27 12.4 1.8 1 23 917 939 917 939 0.93 9 23 0.00021 0.012 16.6 2.6 1 23 945 967 945 967 0.98 10 23 0.0001 0.006 17.6 4.8 1 22 973 994 973 998 0.94 11 23 0.0027 0.16 13.1 0.1 2 23 1135 1156 1134 1156 0.97 12 23 3.4e-06 0.0002 22.3 1.1 1 23 1162 1184 1162 1184 0.99 13 23 5.2e-07 3e-05 24.8 0.8 3 23 1192 1212 1190 1212 0.98 14 23 3.6e-06 0.00021 22.2 4.2 1 23 1218 1240 1218 1240 0.98 15 23 0.00012 0.007 17.4 0.4 1 23 1246 1268 1246 1268 0.97 16 23 0.00014 0.0083 17.2 0.4 1 23 1274 1296 1274 1296 0.97 17 23 1.7e-05 0.00099 20.1 3.4 1 23 1304 1326 1304 1326 0.98 18 23 0.0014 0.081 14.0 2.1 1 23 1332 1354 1332 1354 0.98 19 23 4.7e-07 2.7e-05 25.0 0.7 1 23 1360 1382 1360 1382 0.98 20 23 2e-05 0.0011 19.9 2.2 1 23 1388 1410 1388 1410 0.98 21 23 0.0086 0.5 11.6 3.2 1 23 1416 1438 1416 1438 0.92 22 23 4.2e-06 0.00024 22.0 3.8 1 23 1444 1466 1444 1466 0.98 23 23 6e-06 0.00035 21.5 5.3 1 23 1472 1494 1472 1494 0.97
Sequence Information
- Coding Sequence
- ATGGCAGGGAGGTTAGAAGACGAAGAATATTGGCATTCCAGCGAAGCGAAGGCGTTCAGCTTCGAGGATGATGAGTTTGGGAGTCAGCTGTGCGGCGTCTCGAAGAGCGGAACCGCGAGGTTGTCCCAGCGCGTCAGAGAAGGGATGGGAGGGGGCGAGAGCCCCTACTTCAGCGCAGATTCGCTCTCAGGATCATTGTCGAGGGCAACAATATCAGATGCGCCGCAAACAAACAGCAGGCCTTTGCAAACTCTCATCTCGGAAAGGAGCCTTCATTGCATATTGGAAGCTGGCAACGTCCGCGACAAAGCACCCAGAGGCACCTTAACCCCAGAGGAAGAAGTGCGGATCCTGCGGCGCCAAATTGAGGGTCGCTGGGTGCCTCCACCAGTAAATGAAACCATCACCAAAATCTTGCTGGGCCAGCCGTACTCGTTGGAGCTGTATCGTTCATTGCAAAGCAAGACGGAACTTCTGGACGCAGCTATTGCCATGGGTTTGGTGTACCAGCTGCTGAGGACACGCCCTGATGCCGTGGCGCAGTACAGTCAGTACCTGTCCACTCGGCTTCAACTGCACGAACTGACGGATCTCTTGGAGATGCTTGGAGATAGCAGAGAAGCTGCGATGAAACAGTTTCAAATTGGAGTGTGCGGCACCGTTAATCCCCATCGGAGGCTTCAGAAATTGCAGACGTGTTTGAAAAACCACTTCTCGTCGCCTGACAGCAGAGACCAACAGTTGGTGGATGGCTACATTAAACTATTGGaatggCAGATAGCAATGGCAGGAACAGACGCAGAAATTGCCAAGGTCTTGGTGGGACAGTCCGTGCTATCATCGCTTGCCTATGCTTGCCGTCATCATTGGGGCGAACCGCGGGGTGCTGCAAGCTCACCTCTCACCCTAAGCCAGCAGCAAGGAGTGAGCGATCGGCATTTCCAGTGGACCGTGCTCACGGTTCGAGCTTCCATGAAGGCCTGGGATGACGTTGAAGGATTGTTCATCACCAAAAGCTGGCTGGGAGGAAAGAAGCTGAAGGCGGCCGTGCCCATGGAGCAAGTGGTGCTGCAGCTGCACATGCACGGCGCTCCGACGGAAGTGCTCGTCAAGTATCTAGAGCTGATAGACAACGCAGACAAACGGGTGGCTCTGGCCCAGAAGTTGCAGTGCCACAAGGCTGTGATCAACGTGTTCATATCGAAACGGGACAGGCAATCTCTGATATCGTACAAAGCGAATCTTCACCCGCAGCGTAGCAGTGATATCAgactatttaatttctttcaaagtgttaatatgaaccatatatattttataaacaatacttTTATATTTGTCTTCTTCAGTTTTATACTACAGATGGAAGCCAATAACAATATGATGACCCAACAGATCAAAGCAGAAATTGATGATTTGGAAATAGCAACAAGTCCTTGTTATGATTCAGACGAAGATAAAAAGAGTCTTCAGCAGCAGATTAAAAAAGAAGCAAAGACATGCTTCAGTGATCATAGAGAATGTGGAAGTGAGGTTTCTCTAGAGGAAGATCTTTCTATTGACGAGAAAGGATTATTCAAAACAGAATGTCTAAATTGTTCTTACGATTTTAACGAAAGCTTTCGTGAAGATGACGACCATAATTCAAATGTGAATGAGGAGAATGCCCATGGAGGACTCGATGATGATTCCATTTCTTGTGAATCTTATTTTGAAGAGAATTTCAAGAGAGGCGCAACAACTAAAGAAATTGTTGGTCCTTTGCAATGTCCAATCTGCAACAAACCATTTCCTCggaaaaaaaactttaatcaACATATGAAGACACATATAAACAATCGATCTTTTCATTGTGAAACATGCGGAAAATCATTTTCTCGTAAAGATGTTCTTCATAAACACTTGATTTCCCACTCGACCGTTCGTTCATTTAGTTGCAAAATATGTACACGATCCTTCAATCACAAACATCACCTTTCAAGACATATGACGACCCACACAACCAATCGTCCATTTGAGGATCGACCTTTTCAGTGTGAAATGTGCAGCAAGTGTTTTACACGAAAAAGTCACAAGATGATGATGCTGCAGATCAAAGAAGAAGTTTGTGACATTTCAGAAGTTGAACAAAGAAACTGTGGTAACGCAGAAGATAAAAAATGTCTTCAGATAATAAAAGAAGAAGACAATCGTATTTCAGAAGTAGATACAAACTACAATGATAATTTTGAAATCTATCCTattgagaaaattgaaaataagGTATTTCTAGAGGAAGTTCCCAACGAGAGTCTTTCTACAGATGAgaacaatttatacaaaaaagAGCATGATTTTAATGTAAGCTCTGATGAAGATGATCGCTGTAAATCAAATGTGAATTTGATCAATGCTGATGAGATTTTTCATGGAAATGCAGCTGAAGACAGTTCTTGTGAAAGATTGGATAAATCGTATTTGAAAGAGAATTCTAAAGGAGACAAAATGGATAGTCCATTCCAATGTGCAGAGTGCAACAGACAATTTTCTAGTAAACAAAAGCTTAAACGGCATATGGATATTCATACAAGCAATAGACCATTTCATTGTGAAACTTGCAAAAAATCTTTTATTCGTAAAGACCATTTCGATACACATTTGATTACCCATGCAAACATTCGCCCATTTGAATGTGAAATATGCAGAAAATCCTTTGGTCAAAGGCGCCTTCTAACTAGACACATGACTACTCACACAGAAGATAGACCATTTGCGTGTGAAATATGCAGCAAATGCTTTAAACTAAAAGCAAGTCTCGATAGGCATTCTGTTAGTCACAGGAGTGACCATccttttcaatgtaaaatatgcaGCAAATCTTATGGTTTTAAATCGTTTCTCAAAACTCATATGATTAATCACACTATGGATCGACCGTTTCGATGCGATATATGTAGCAAATGTTTTGCTCATAAATCGTTTCTACAATCTCATATGAACATGACGATGCAGCACATCAAGGTAGAAATAAATGACATTCCGGAAGTGGAATCGGACGACTATGATCATGCTGAAGTCCTGCACCAGCCAATTAAAGAAGAAGCCTATCAGATTTCAGAAGTAGAAGCGCAGTTCAGCGATCCTCCAGAAGATCATTCTGTGTTTGTCAAAATTCCTCCAATCGAAAAGTGTGAAAGCCAGGATTCACCTGAGGAGAGCTGTTTCTCTGTAGACGACAACTGTCTATTCAAAACAGAGTATGTAAGTTGTTCTTATGAAGTAAAATCAGACGTGGACGTGGATTCTGGTGATGAGATTATAAGACAGGAAGATGGTCAATATTCTTGTGCAACGCTTGATAAACTTAATTTGAAAGAGGATTTCGAGGAGCAGAACTCCACCGAAGAAACAGTTAATTCTCTTCAATGCGCAATATGCAAAATAGAATTCCCTCAAATAAAGAAGCTCAAAGAACATATGAATATCCATGCAAACAGCGAATCATTTCAGTGTGAGGCATGCAAGAAAGTGTTTAGCCGTAAAGATTATCTCGACAGACATATGATTACTCACACGACCATTCGCCCGTTTGGGTGTGAAACGTGCGGGAAATCCTTCAATCGTAAAGACAATCTCGAAAAACATCTGATTACTCACACGACCGCTCGTCCGTTCGAGTGTGAAATATGCAGAAAGTCCTTCAATCAAAAAGGTCATCTTTTTAGACACATGTTTACACACACAAAAAATAGTCCCTATGTTTGtaaaatatgcaacaaaagtttTGGTCAGAAATCTAGACTCGATATACATGTGATTTCTCATGAAAGCAATCGTACCTACGagtgtgaaatatgtaaaaaatcttTTGTTCGTAAAGATCTTCGTGATAGACATTTGATTATTCACACGACCAATTCCAATTGTCAATATCAGTGTGAAATTTGCAGCAAAACGTTCAAACAAAAAAACCACATTAGTAAGCATATGCTTATTCATACCAACAATCGTTCATTTCGGTGTGAAATATGTGGCAAGTCGTTTCTGAGGAAGAGTCATCGAGATGGTCACATGATTACTCATACGAATATACGCCCATATCCTTGTGAAATTTGCAAGAAAGCTTTTACTCAAAAAAGCAGTCTTAAATTacatttgcttactcactcgACAGCTGTTCCGTTTCAGTGTGACGTCTGCAGCAAAGCTTTTAGACAAAAGAGCACCCTCGACAGGCATAAAACGACTCACTCAAATGGCCATCTCTTCCATTGCGAAATATGCAGCAAGTCTTTTCCTCGTAAAGATTGCCTCGATTCCCATTCGGTCATTCATTCGACCGACAGTCCGTATCGATGTGAAGTATGTAACAAGTGTTTTTCTCGTAAATCGTACGTCAAAACTCACATGATCATCCATGGCATGGATCGTCCTTTTCACTGTGagatatgcaacaaatcttttactCAAAGAAGCAATCTCAACAAGCATTTTACTACTCACCAGCAATTGCCTGCTGCTTCCTTTCTCCAGGGGTAG
- Protein Sequence
- MAGRLEDEEYWHSSEAKAFSFEDDEFGSQLCGVSKSGTARLSQRVREGMGGGESPYFSADSLSGSLSRATISDAPQTNSRPLQTLISERSLHCILEAGNVRDKAPRGTLTPEEEVRILRRQIEGRWVPPPVNETITKILLGQPYSLELYRSLQSKTELLDAAIAMGLVYQLLRTRPDAVAQYSQYLSTRLQLHELTDLLEMLGDSREAAMKQFQIGVCGTVNPHRRLQKLQTCLKNHFSSPDSRDQQLVDGYIKLLEWQIAMAGTDAEIAKVLVGQSVLSSLAYACRHHWGEPRGAASSPLTLSQQQGVSDRHFQWTVLTVRASMKAWDDVEGLFITKSWLGGKKLKAAVPMEQVVLQLHMHGAPTEVLVKYLELIDNADKRVALAQKLQCHKAVINVFISKRDRQSLISYKANLHPQRSSDIRLFNFFQSVNMNHIYFINNTFIFVFFSFILQMEANNNMMTQQIKAEIDDLEIATSPCYDSDEDKKSLQQQIKKEAKTCFSDHRECGSEVSLEEDLSIDEKGLFKTECLNCSYDFNESFREDDDHNSNVNEENAHGGLDDDSISCESYFEENFKRGATTKEIVGPLQCPICNKPFPRKKNFNQHMKTHINNRSFHCETCGKSFSRKDVLHKHLISHSTVRSFSCKICTRSFNHKHHLSRHMTTHTTNRPFEDRPFQCEMCSKCFTRKSHKMMMLQIKEEVCDISEVEQRNCGNAEDKKCLQIIKEEDNRISEVDTNYNDNFEIYPIEKIENKVFLEEVPNESLSTDENNLYKKEHDFNVSSDEDDRCKSNVNLINADEIFHGNAAEDSSCERLDKSYLKENSKGDKMDSPFQCAECNRQFSSKQKLKRHMDIHTSNRPFHCETCKKSFIRKDHFDTHLITHANIRPFECEICRKSFGQRRLLTRHMTTHTEDRPFACEICSKCFKLKASLDRHSVSHRSDHPFQCKICSKSYGFKSFLKTHMINHTMDRPFRCDICSKCFAHKSFLQSHMNMTMQHIKVEINDIPEVESDDYDHAEVLHQPIKEEAYQISEVEAQFSDPPEDHSVFVKIPPIEKCESQDSPEESCFSVDDNCLFKTEYVSCSYEVKSDVDVDSGDEIIRQEDGQYSCATLDKLNLKEDFEEQNSTEETVNSLQCAICKIEFPQIKKLKEHMNIHANSESFQCEACKKVFSRKDYLDRHMITHTTIRPFGCETCGKSFNRKDNLEKHLITHTTARPFECEICRKSFNQKGHLFRHMFTHTKNSPYVCKICNKSFGQKSRLDIHVISHESNRTYECEICKKSFVRKDLRDRHLIIHTTNSNCQYQCEICSKTFKQKNHISKHMLIHTNNRSFRCEICGKSFLRKSHRDGHMITHTNIRPYPCEICKKAFTQKSSLKLHLLTHSTAVPFQCDVCSKAFRQKSTLDRHKTTHSNGHLFHCEICSKSFPRKDCLDSHSVIHSTDSPYRCEVCNKCFSRKSYVKTHMIIHGMDRPFHCEICNKSFTQRSNLNKHFTTHQQLPAASFLQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -