Bger022779.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blattella germanica
Gene Symbol
-
Assembly
GCA_003018175.1
Location
PYGN01000021.1:2510000-2541315[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 6.7e-05 0.0038 18.2 2.6 1 23 10 32 10 32 0.97
2 25 2.6e-05 0.0015 19.5 10.1 1 23 38 60 38 60 0.98
3 25 0.0021 0.12 13.5 2.9 2 23 67 88 66 88 0.96
4 25 3.5e-05 0.002 19.1 7.2 1 23 94 116 94 116 0.97
5 25 3.7e-05 0.0021 19.0 1.2 1 23 134 157 134 157 0.97
6 25 5.3e-08 3e-06 28.0 1.4 1 23 162 184 162 184 0.98
7 25 8.6e-05 0.005 17.9 2.5 1 23 190 212 190 212 0.98
8 25 0.63 36 5.7 3.6 1 23 218 240 218 240 0.94
9 25 6.3e-05 0.0036 18.3 0.4 1 23 246 268 246 268 0.98
10 25 3.5e-05 0.002 19.1 3.4 1 23 274 296 274 296 0.97
11 25 4.7e-05 0.0027 18.7 2.9 1 23 302 324 302 324 0.98
12 25 8.9e-06 0.00051 21.0 0.3 1 23 330 352 330 352 0.98
13 25 0.004 0.23 12.6 11.6 1 23 358 380 358 380 0.97
14 25 0.00012 0.0067 17.4 0.6 1 23 386 408 386 408 0.97
15 25 5.7e-06 0.00033 21.6 0.8 1 23 414 436 414 436 0.98
16 25 0.00046 0.026 15.6 4.9 1 23 442 464 442 464 0.98
17 25 0.00021 0.012 16.7 3.0 1 23 470 492 470 492 0.98
18 25 4e-05 0.0023 18.9 0.2 1 23 498 520 498 520 0.98
19 25 0.0034 0.2 12.8 0.6 1 23 526 548 526 548 0.97
20 25 4.3e-05 0.0025 18.8 0.1 1 23 555 577 555 577 0.97
21 25 1.3e-05 0.00074 20.5 2.8 1 23 583 605 583 605 0.96
22 25 3.2e-06 0.00018 22.4 1.9 1 23 611 633 611 633 0.98
23 25 0.00025 0.014 16.4 1.6 2 23 640 661 639 661 0.97
24 25 1.1e-07 6.5e-06 26.9 1.1 1 23 689 711 689 711 0.98
25 25 0.0031 0.18 13.0 0.5 1 23 717 740 717 740 0.97

Sequence Information

Coding Sequence
ATGCGTTTTCACAAAGGAGATCTACCACACTCGTGCAATTTGTGTAAAAAATCATTTCCCTTTGAAAGCGACCTCGAATCACATTATCAAACTCACAATGTGCATCGTCCATTTTCTTGTAAAATCTGCGGAAAAACTTTTTGTCATCACAGTTCTTTATATAAGCACATGCGTTTTCACAAAGGGGAACCACCGCAATCGTGTGATTTGTGTAAAAAGTCATTCTCATGTAAAAGCGCTCTCAATAGGCATGTGGTAACCCATGGTTCAAATCGTCCATTTTGTTGTGAAATATGTCAGAAATCTTTCTATCATTATGATTCTCTAAATAAGCATATGCGGTACCACAAGGGAGACCTACCACATTCCTGCGAACTTTGTGAAAAGTCGCAAGAACAGTTTTCATGTGAAGTATGCAACAAAACGTATCTTACGAAAAGTAATCTCCGCAGACATGTAATCACTAATCATGGGTACAATCCTTATTCATGTAATATCTGTGGGAAAACATTTACTCAATCGAATAACCTGCGTATACATGAACGTCGTCACTTGGGAGATCTACCATATTCCTGTAATGTTTGTGATAAAAAATATGCTGGTAGATGTGAACTTTATAGACACATGCGTCTTCACGAAGGAGATCTACCGTATTCGTGTGATTTGTGTAAAAAATCATTTCTCTGTAAAAGTGAACTTGATAGACATAATCTAACTCACAGCCAGTATCGTCATTTCTCTTGTGAAATTTGTGGAAAAGGGTTTTTGCAAAAAAACTCTCTTAAAGCGCATTTATTAAAACACTCGAAGCAAGAAttctttttttgtgaaatttgtaACAAAAAGTATCTTAGAAAAAGTAGTCTCCGCCGACATTTACGTACTCACGATGAGGATGATAAATTTTCTTGTAATATCTGTGGGAAAAAGTTTACTGAAATGAGGAACTTACATATTCATGAACGTCGACACATGGGGGATCTACCctattcctGCAAAATGTGCGATAAAGCGTTTGTAGCCAAATATCTCCTAGTTAGACACATGGGGACCCATGGAGGGGAACGTTCATTTTGttgtaaaatttgtgaaaaaacttTTTGTCATTACAATTCTCTACATAGACACATCCGTTTACACGAAGGAGATCTCCCATATTCTTGTGGTTTGTGTAAAAAATCATTTGTTGTTAAAAGCGACCTTGATAGACATAATGAAACTCACAGCCAGATTCGTCAGTTTTCTTGTGAAATTTGTGGAAAAGGTTTTATTCACAAAAACACTCTTAATGCACATGTATTAAAGCACTCAGAGCAAGCATGCTTTTCATGTGAAGTTTGCAACAAAACATATCTTACAAAATGTAGTCTCCGCAGACATTTACGTACTCATGATGAGGATGATAAATTTTCTTGTAATATCTGTGGGAAAAAGTTTACTGAAATGAGGACCTTGCATATTCATGAACGTCGACACATGGGGGATCTACCctattcctgtaatttttgtgataaaaaatatGCTGCTAAAGGTGCACTTGTGAAACATATTCGTGTTCATAGCGGCGAACGTCCATTTGCATGTACTATTTGTGGAAATCTTTACACTCGAAAACATGATCTCGGTGTTCATTTGCTTAGTCATTCAGGAGAAAATTTGCCGTTTTCATGTGAAATTTGTGACAAAGCTTTTCCCATCAAATCCTATCTTGATAGACATTTGGCCTCCCATAGAAAGGAGCCTTTATTTTCTTGTGAAATCTGTCGGAAAACTTTTAAGCAAAGTGGTTCATTACAAAGACATGTTCATCTTCACACAgataatgtattattttcttgCCAATCGTGCGACAAATCTTTTACTCGTAAGAGTGAGCTTGCTCTACATAATCGTACTCATGATCAAAATCGTAAAATTTCGTGTCAAATATGTGGGATGTGCTTTTTTGAAAAAAGCTTATTTAATGAACATATGGATACACACAGCAACCATGAACTGCTTAAGTGTTCAGTTCCAAAAAAAGAGTTGCATAAGGATGTACTTGCTCACAGTAAGTTTCGTCCGTTTTCGTGTGATATCTGTGGAAAGGATTTTGTTcgtaaatctaatctaaatataCACAAACGTCGTCACTTGGGACTTTTACCATATTCCTGCGcagtttgtaaaaataaatatccttCTAAGGGTGAACTTATGAAACATTTGTCTCGTTCCCATAAATACAGTGACTAA
Protein Sequence
MRFHKGDLPHSCNLCKKSFPFESDLESHYQTHNVHRPFSCKICGKTFCHHSSLYKHMRFHKGEPPQSCDLCKKSFSCKSALNRHVVTHGSNRPFCCEICQKSFYHYDSLNKHMRYHKGDLPHSCELCEKSQEQFSCEVCNKTYLTKSNLRRHVITNHGYNPYSCNICGKTFTQSNNLRIHERRHLGDLPYSCNVCDKKYAGRCELYRHMRLHEGDLPYSCDLCKKSFLCKSELDRHNLTHSQYRHFSCEICGKGFLQKNSLKAHLLKHSKQEFFFCEICNKKYLRKSSLRRHLRTHDEDDKFSCNICGKKFTEMRNLHIHERRHMGDLPYSCKMCDKAFVAKYLLVRHMGTHGGERSFCCKICEKTFCHYNSLHRHIRLHEGDLPYSCGLCKKSFVVKSDLDRHNETHSQIRQFSCEICGKGFIHKNTLNAHVLKHSEQACFSCEVCNKTYLTKCSLRRHLRTHDEDDKFSCNICGKKFTEMRTLHIHERRHMGDLPYSCNFCDKKYAAKGALVKHIRVHSGERPFACTICGNLYTRKHDLGVHLLSHSGENLPFSCEICDKAFPIKSYLDRHLASHRKEPLFSCEICRKTFKQSGSLQRHVHLHTDNVLFSCQSCDKSFTRKSELALHNRTHDQNRKISCQICGMCFFEKSLFNEHMDTHSNHELLKCSVPKKELHKDVLAHSKFRPFSCDICGKDFVRKSNLNIHKRRHLGLLPYSCAVCKNKYPSKGELMKHLSRSHKYSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-