Bger027293.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000522.1:465234-498779[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.61 35 5.7 0.3 1 23 94 116 94 116 0.97 2 34 0.013 0.77 11.0 2.1 1 23 122 144 122 144 0.97 3 34 0.00091 0.052 14.6 0.0 1 23 148 170 148 170 0.93 4 34 0.27 15 6.9 0.7 3 23 178 199 176 199 0.95 5 34 0.0013 0.075 14.1 0.6 3 23 208 228 207 228 0.98 6 34 0.052 3 9.1 0.1 1 16 234 249 234 251 0.89 7 34 0.002 0.11 13.6 0.2 3 23 278 298 276 298 0.97 8 34 2.5 1.4e+02 3.8 3.4 1 23 304 327 304 327 0.92 9 34 3e-05 0.0017 19.3 2.7 1 23 351 373 351 373 0.97 10 34 1.2e-06 6.6e-05 23.8 3.5 1 23 379 402 379 402 0.97 11 34 0.00074 0.042 14.9 3.1 1 23 409 431 409 431 0.98 12 34 6.5e-05 0.0037 18.2 1.8 1 23 447 469 447 469 0.97 13 34 2.6e-05 0.0015 19.5 0.6 2 23 473 494 472 494 0.97 14 34 4.8e-06 0.00028 21.8 2.3 1 23 500 523 500 523 0.97 15 34 0.0061 0.35 12.0 4.4 1 23 530 552 530 552 0.98 16 34 0.00068 0.039 15.0 0.5 1 23 558 580 558 580 0.96 17 34 0.013 0.73 11.0 0.2 1 19 606 624 606 626 0.95 18 34 0.028 1.6 9.9 0.6 1 23 634 656 634 656 0.98 19 34 1.7e-06 9.7e-05 23.2 1.4 1 23 659 681 659 681 0.97 20 34 1.1e-06 6.6e-05 23.8 1.8 1 23 687 710 687 710 0.97 21 34 0.0013 0.075 14.1 1.3 1 23 717 739 717 739 0.97 22 34 0.0036 0.21 12.7 0.8 1 23 745 767 745 767 0.96 23 34 0.017 0.99 10.6 0.1 1 19 803 821 803 823 0.95 24 34 0.0016 0.094 13.8 1.8 1 23 831 853 831 853 0.98 25 34 0.00025 0.014 16.4 4.0 1 23 856 878 856 878 0.97 26 34 0.00066 0.038 15.1 5.1 1 23 884 907 884 907 0.94 27 34 0.0019 0.11 13.6 7.0 1 23 914 936 914 936 0.98 28 34 0.0033 0.19 12.9 1.0 1 23 942 964 942 964 0.95 29 34 0.19 11 7.4 2.1 1 23 970 993 970 993 0.95 30 34 8.3e-06 0.00048 21.1 2.2 1 23 1003 1025 1003 1025 0.99 31 34 0.059 3.4 8.9 1.4 1 23 1032 1054 1032 1054 0.94 32 34 7.8e-07 4.5e-05 24.3 0.8 1 23 1060 1082 1060 1082 0.99 33 34 6.4e-08 3.7e-06 27.7 0.8 1 23 1088 1110 1088 1110 0.98 34 34 0.00019 0.011 16.8 0.8 1 22 1116 1137 1116 1137 0.97
Sequence Information
- Coding Sequence
- ATGTTTCATATTCTgTCTGCGACTGGCTGTTCGTCTCGCTCAGTGAAAAGTAGAAAGTCATCTAAGCCAGGAAGCGAGAAATCttccaagaagaagaagaagaagaggaagacacGTAGAGGGGAAGGTATCTGCAAATACGGCAAGGCCCAGGATAATGGTTCATACAGTTATATTTTAGATGTTCCTGTAAAGATAGAAATTGAGTCTGATGATGAAGATAAGGGTTTGGAATTCTTCCAAACTATTGGATTACACGCACAGAAGGATACCACCCCATTTtcatgtaatgtatgtaatgatGCATTTCAATCTTTACAAGAAGTTATAACACACAAAGAAACTCACGCTAAAGAGAAGGCATTCTTCTGCAATATATGTGATTATGCCACCGGATACGAGTATCACCTGGAATTGCATTATAAAAAGCATTCAAACGAATACACATGTGAAGCATGCGGAAAGGGCTTCGGCACGTCTGCAGATTTGCAAGCTCATGCCGTTCTACACGCAACAAGACAATCTTATGGCTGCGATATTTGTAACCGGCAATATCTCAATAAAAAGAATTTAGTCGAACATAAGAAGTTGAGCCACTCCGGTGCAAAAGGATCTCACGGTTGTGAAACATGTGGAAAGTCATTCCTCTATAAATCAACTCTTCAATTACACCAAATTTCTCATTCTGGTGAAAAACCTTTCCCCTGCGACATGTGTGGAATGACGTTTAGATATAAACACAGCATGTTGGCAACGCAAATGGAAGAAAAATCAATGGAATGGGagcaaataaatatacatatgaatATGGTTGACACAGAAATGTATGGATGTGAGGTATGTCTGAAAGTGTGTTCTTCCAGTGATGATTTAGAGGAACACTTAGCAACACACACTGGGACCACTCCCTTCATTTGTGAAGTTTGCTGCAAACAATACTCGCGCAGGACAAGTTTATTGTACCATAAGGTTATGAAACATCCAGAGACGGAGATTGGACGCAGAATTCACACGTGTGAGACGTGTGCTGCTTACAGTTCTTGCAGGATGCACAAGTGCCCTGTATGCAATAAAGAATTTAAACATAAGGAAAAGTTGAATGACCATATAGTGGTGCATAGGCCTGAACGTCCATATTCATGTGAAATCTGTGGAAAAAAGTTCAAAAGGCAATACCATCTAACAGTTCATAATCGCAAAGTTCATATTGGACTAGAGAAGAAATTTGAATGTCCCATATGTGAACATAAGACGACTTCAAAATGTGATTTGGAAATTCACTTGAGAAGGCATAAAAAACTCGCTATTCACAGAGAGTCCCATAACATTACAAAGGATTTTCAATGTCCTGTgtgcaacaaaatatgtaaaactgcTTTTTTTCTTAAAAGACACATGGCCGCACATATAGTGAACAAGTGTCCCGTATgcaataaagaatttaaaattaaagataagTTGACTAGACATATGGTGGTGCATAGACTTGAACGCCCGTATTCATGTGAAATCTGTGGAAGAAAGTTCAAACAGCGATATAATCTATCAGATCACATACACCGGGTTCATATTGGACTAGAGAAGAATTTTGAATGTCACATGTGTGAACATAAGACGGCTTCAAAATCCGAAATGCGCTCTCACATGTTGAGACACCTTAAGGTCTATAGATTCTTTTGTGATGTATGTGGTAAAGGATATTACACTGCAAACGATTTGAGACTTCATAAGAATTTACATGACACTGTGAAAAGAGTTTCCAATCCAATGTCGGTACTGTTGCTGTACAGAGTCATCGCTCCACCAACTCTTAAATTCCGTTGTGATAAGTGTGGATTATATTTTGATTCGCAAGAAAAACTCTCTGTTCATGAGATATGCCATAATATTAGAAAAAATTTTCAATGTTCTGTGTGTaagaaaatatgtgaaaatgCATTTATTCTAGAGACGCACATGGCCGTGCACAAGGCGCACAAGTGCCCCGTATGCGATAGAGAATTTAAACAGAAAGATCAGTTGACTAAACATTTGGTGGTTCATCGACCTGAACGGCCATATTCGTGTGAAATCTGTGGAAAAAAGTTCAAAAGGCAATACTATCTAACAGTTCACAATCGCCGGGTTCATATTGGACAAGAGAAGAAATTTGATTGTCCAATTTGTGGACATAAGAAGTCTTCAAAATGGTATTTGGAAATTCACATGAGAAGGCATCGTAAGGACTATAGATTCTTTTGTGACGTATGCGAGAAAGGGTATTATACTGCAAAAGATTTGAAACTTCATAAGAATTTACATGACACTGAAAAGAGTTTCCAATGTGAACTCTGCCCACAAAAGTTTCTAACGAAGGGCAGGTCGGTACTGTTGCTGCACAGAATCATCGCTCCACCAACTCTTAAATTCAGTTGTGATCTGTGTGGATTGTATTTTGATTCGCAAGAAAAACTCACTGTTCATGAGATATGCCACAATATTGGAAACAATTTTCAATGTTCTGTGtgtaacaaaatatgtaaaactgcaTTTATTCTAAAGAGGCACATGGCCGTGCATAAGGTGCACAAGTGCCCTGTATGCAATAAAGAATGTAAACTTAAACAAAATTTGACTAAACATATGGTGGTGCATAGACCTGAACGTCCATATTCATGTGAAATCTGTGGGAAAAATTTCAAACGGCAATTCTGTCTAACAGTTCACAATCACCGAGTTCATATTGGACTAGAGAAGAAATTTGAATGTCCCATGTGTGAACATAAGACGACTACAAAATGTGATTTGGAACATCACATGAGAAGGCATAATAAGGACTATAGATTCTTTTGTGATGTATGTGACAAAGGATATTATACTGCAAACGAGTTGAAACTTCATAAGAATTTTCATGACACTGAGAAGAGTTTCCAATGTGAACTCTGCCCACAAAAGTTTCTAATGAAGGCCAGCTTGCACAGACACTATTTCTCTGCTCATAACAAAACTAGATATGTACGGAAAGTGTATAAGTGTGAAATATGTGGAAGGAGCATGAGAAAGAAATCGGACTACACCAGACATCTACGTACTCACACGGGTGAAAAAGCAGAATTCCTTTGTGATATATGTGGAAAAGGACTTACCACTCGTAGAGCTTTAGCATGTCACAAAAGAAGTCATACCGGGGAGAAGCCATATGAATGTGACGAATGTGGAAAATGTTTTTCTAAAAGAGGTAGTTTGCTCGTGCATGTCCGCGTCCATACCGGCGAGCGTCCATATACGTGCGAAGAATGTGGAAAATCATTTACTCAGCGTTCTCCATTGACCATTCATATGCGCTATCATACAGGGCAACGGCCATACAAGTGTGATCGTTGTGGCAAAGGATTTGTGACACTAACGTCCATGAAGACTCATCAGAAGACTCCATGTTTCCCAGTGCCATCCTGA
- Protein Sequence
- MFHILSATGCSSRSVKSRKSSKPGSEKSSKKKKKKRKTRRGEGICKYGKAQDNGSYSYILDVPVKIEIESDDEDKGLEFFQTIGLHAQKDTTPFSCNVCNDAFQSLQEVITHKETHAKEKAFFCNICDYATGYEYHLELHYKKHSNEYTCEACGKGFGTSADLQAHAVLHATRQSYGCDICNRQYLNKKNLVEHKKLSHSGAKGSHGCETCGKSFLYKSTLQLHQISHSGEKPFPCDMCGMTFRYKHSMLATQMEEKSMEWEQINIHMNMVDTEMYGCEVCLKVCSSSDDLEEHLATHTGTTPFICEVCCKQYSRRTSLLYHKVMKHPETEIGRRIHTCETCAAYSSCRMHKCPVCNKEFKHKEKLNDHIVVHRPERPYSCEICGKKFKRQYHLTVHNRKVHIGLEKKFECPICEHKTTSKCDLEIHLRRHKKLAIHRESHNITKDFQCPVCNKICKTAFFLKRHMAAHIVNKCPVCNKEFKIKDKLTRHMVVHRLERPYSCEICGRKFKQRYNLSDHIHRVHIGLEKNFECHMCEHKTASKSEMRSHMLRHLKVYRFFCDVCGKGYYTANDLRLHKNLHDTVKRVSNPMSVLLLYRVIAPPTLKFRCDKCGLYFDSQEKLSVHEICHNIRKNFQCSVCKKICENAFILETHMAVHKAHKCPVCDREFKQKDQLTKHLVVHRPERPYSCEICGKKFKRQYYLTVHNRRVHIGQEKKFDCPICGHKKSSKWYLEIHMRRHRKDYRFFCDVCEKGYYTAKDLKLHKNLHDTEKSFQCELCPQKFLTKGRSVLLLHRIIAPPTLKFSCDLCGLYFDSQEKLTVHEICHNIGNNFQCSVCNKICKTAFILKRHMAVHKVHKCPVCNKECKLKQNLTKHMVVHRPERPYSCEICGKNFKRQFCLTVHNHRVHIGLEKKFECPMCEHKTTTKCDLEHHMRRHNKDYRFFCDVCDKGYYTANELKLHKNFHDTEKSFQCELCPQKFLMKASLHRHYFSAHNKTRYVRKVYKCEICGRSMRKKSDYTRHLRTHTGEKAEFLCDICGKGLTTRRALACHKRSHTGEKPYECDECGKCFSKRGSLLVHVRVHTGERPYTCEECGKSFTQRSPLTIHMRYHTGQRPYKCDRCGKGFVTLTSMKTHQKTPCFPVPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -