Bger006359.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000440.1:997504-1000275[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 9.6e-06 0.00055 20.9 5.6 1 23 123 145 123 145 0.98 2 23 1e-07 5.7e-06 27.1 0.1 1 23 151 173 151 173 0.97 3 23 7.8e-07 4.5e-05 24.3 0.1 1 23 179 201 179 201 0.98 4 23 3.8e-07 2.2e-05 25.3 0.6 1 23 207 229 207 229 0.97 5 23 4.8e-06 0.00028 21.8 1.0 1 23 235 257 235 257 0.98 6 23 0.019 1.1 10.5 9.7 1 23 263 285 263 285 0.98 7 23 4.6e-07 2.7e-05 25.0 0.3 1 23 291 313 291 313 0.98 8 23 1e-06 5.7e-05 23.9 1.7 1 23 319 341 319 341 0.98 9 23 3.2e-06 0.00018 22.4 2.2 1 23 347 369 347 369 0.98 10 23 0.011 0.61 11.3 2.2 1 23 375 397 375 397 0.98 11 23 3e-06 0.00017 22.4 0.6 1 23 403 425 403 425 0.97 12 23 8.5e-08 4.9e-06 27.3 0.6 1 23 431 453 431 453 0.98 13 23 1.8e-05 0.001 20.0 0.1 1 23 459 481 459 481 0.98 14 23 7.1e-06 0.00041 21.3 0.5 1 23 487 509 487 509 0.98 15 23 1.6e-07 9e-06 26.5 1.1 1 23 515 537 515 537 0.98 16 23 1.2e-07 7.1e-06 26.8 0.5 1 23 543 565 543 565 0.98 17 23 1.2e-07 7e-06 26.8 0.1 1 23 571 593 571 593 0.98 18 23 1.4e-05 0.00081 20.3 2.6 1 23 599 621 599 621 0.98 19 23 1.6e-05 0.00091 20.2 1.0 1 23 627 649 627 649 0.98 20 23 1.7e-06 0.0001 23.2 1.1 1 23 655 677 655 677 0.95 21 23 2.1e-07 1.2e-05 26.1 0.3 1 23 683 705 683 705 0.98 22 23 5.7e-06 0.00033 21.6 1.5 1 23 711 733 711 733 0.98 23 23 7.3e-05 0.0042 18.1 10.5 1 23 739 761 739 761 0.98
Sequence Information
- Coding Sequence
- ATGgaTAATACATTTGCAGATGAAAAAATACTGCTACGAGAAATAGAACCTAATACATCTCTAAAACCAATACTTATTAAAGAGGAGAAAGAAGAAATTCAAGAGCCTTCGAATCATTTTACTGGAGATACAACAATTGGAAATTTAAACTTGgtaattgatgaaacaaattCATTATCAAACATTGGCTGTAGTTTCTCTTCTCCCAGAATTAGTAACATGAATATAGTCAATGATTGTACTTTTGTTCAACATAAGTTGATTCCAATTATAGATTCTATAGATGACATTTTTCAATCTAATAAATCAATATCTAATGAGAATAAACTCAACATGCATATTCAATCACACACTGGGaaaaatacttttatatgtgAGCATTGCAGTAAATGTTTCACACGTAGGAAATTTCTCATAGCACACATGCGTATTCATACTAAcaaacgtccatttgtatgtgaaattTGTGGTAAATCTTTCATTCAATCATCAGCTCTTAAGGTACATATGTATATTCACTCTGGCAAACGTCCATTTGTGTGTGAACTTTGTGGTAAATCTTTGAGTACCTCATCTGCTCTTTCTGTACATATGCGTATTCACACTGGCAAACGCCCATTTGTATGCGAATTTTGTGGTAAATCTTTCATTCAATCATCGACTCTTAAGGTACATATGTATATTCACACTGGCAAACGTCCATTTGTGTGTGAACTTTGTAGTAAATCTTTCACTGATTTTTCTTCAATAGAATCACATATGCGTACTCACAcgggtgaacgtccatttgtatgtgagcATTGCAGTAAATGCTTCACATGTAGTAAGTCTCTCACAGCACATATGCATATTCACACTGGtaaacgtccatttgtatgtgataTTTGTAGTAAATCTTTCTATCAATCATCTGCTCTCAATTTGCATATACGTATTCACACTGGCAAACGACCATTTGTATGTGAACTTTGTAGTAAATCTTTCATTCAATCTGCTCATCTGAAATCACATATGCTTACACACTCTGAtcaacgtccatttgtatgtgaactaTGTAGTAAATCTTTCAATCAATCTGCTCATTTGAAAACACATCTACTTACACATTCTGTCAAaagtccatttgtatgtgaactaTGTAGTAACTCTTTCATTGAATTTTCTACATTCGAATCTCATATGCATACTCATACTGGTGAACATCCTTTTATATGTGAGCTTTGTAGTAAATCTTTCATTAAATCATCTGCTCTCAAGACGCATATGCAAATTCACACTGGCAAACGCCCATTTGTATGTGAAGTTTGTGGTAAATCTTTCATTCAATCGTCAGATCTTAAGGTACATATGCATATTCATGCAGATAAACGtccatttgaatgtgaactttGTGGTAAATCTTTGAGTAGCACATCTGCTCttaatgtacatatgtatattcatACTGGTAAATTCCCATTCGTATGTGAAATTTGTAGTAAATCTTTCATTGATATTACTACACTCAAATCACATATGAGTACTCACACTAGTGAATCCCCATTTGTATGTGAAATTTGTAGAAAATCTTTCAGTAAGTCATCTGCTCTCAAGAAACATTTGCGTATTCACACTGGTAAACGTGCATTTGTATGCGATATTTGTAGTAAATCTTTCTATCAATCATCTGCTCTCAATTCGCATATGCGTATTCACACTGGCAAACGTCCATTTGTGTGTGAAAGTTGTGGTAAATCTTTCATTCAATCATCTGCTCTTAAGGCACATATGCGTGCTCATACTGGAGAACGTCCTTTCATGTGTGTTATTTGTAGTAAATCGTTTAGTACATTACATTCTGTCAAGGAACATATGCGTACTCACACTGGTGAACGGCCTTTTCCATGTGACATTTGTAGTAAATCTTTTGCTTTAGCTTGTGCTCTGAAATCACATATGCGTcgacacactggtgaacgtccatttctGTGTCGTATTTGTAACAGATCTTTCACTCAATCAGGTGAACTGAAATCGCATATGCTTACTCACTCTGGCGAACGTAAATTTGTATGTGATATTTGTAGTAAAACTTTCATACAATCTTACGCTCTCAAAATTCATATGCGTATTCACAGTAGTGATCGTCCATTTATATGTGAACATTGTAGTAAATCTTTCATTCGATTAGATGATGTCAAATCACATATGCGTATTCACATTAATGAACGCCCATTTGTATGCAAACATTGTAATAAATCTTTCAAACATAGAAGTAGCTTCAAGAGGCATTTGCATATTCATGAACAAACAAtcacatctgaaaaaaaaaactaa
- Protein Sequence
- MDNTFADEKILLREIEPNTSLKPILIKEEKEEIQEPSNHFTGDTTIGNLNLVIDETNSLSNIGCSFSSPRISNMNIVNDCTFVQHKLIPIIDSIDDIFQSNKSISNENKLNMHIQSHTGKNTFICEHCSKCFTRRKFLIAHMRIHTNKRPFVCEICGKSFIQSSALKVHMYIHSGKRPFVCELCGKSLSTSSALSVHMRIHTGKRPFVCEFCGKSFIQSSTLKVHMYIHTGKRPFVCELCSKSFTDFSSIESHMRTHTGERPFVCEHCSKCFTCSKSLTAHMHIHTGKRPFVCDICSKSFYQSSALNLHIRIHTGKRPFVCELCSKSFIQSAHLKSHMLTHSDQRPFVCELCSKSFNQSAHLKTHLLTHSVKSPFVCELCSNSFIEFSTFESHMHTHTGEHPFICELCSKSFIKSSALKTHMQIHTGKRPFVCEVCGKSFIQSSDLKVHMHIHADKRPFECELCGKSLSSTSALNVHMYIHTGKFPFVCEICSKSFIDITTLKSHMSTHTSESPFVCEICRKSFSKSSALKKHLRIHTGKRAFVCDICSKSFYQSSALNSHMRIHTGKRPFVCESCGKSFIQSSALKAHMRAHTGERPFMCVICSKSFSTLHSVKEHMRTHTGERPFPCDICSKSFALACALKSHMRRHTGERPFLCRICNRSFTQSGELKSHMLTHSGERKFVCDICSKTFIQSYALKIHMRIHSSDRPFICEHCSKSFIRLDDVKSHMRIHINERPFVCKHCNKSFKHRSSFKRHLHIHEQTITSEKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -