Bger022777.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blattella germanica
Gene Symbol
-
Assembly
GCA_003018175.1
Location
PYGN01000021.1:2615906-2639094[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 45 0.68 39 5.6 0.1 10 23 2 15 1 15 0.93
2 45 0.23 13 7.1 8.5 1 23 22 45 22 45 0.96
3 45 0.035 2 9.6 0.9 1 23 51 74 51 74 0.94
4 45 0.0021 0.12 13.5 0.4 1 23 80 102 80 102 0.96
5 45 0.0015 0.088 13.9 0.3 1 20 108 127 108 130 0.94
6 45 1.2e-05 0.00072 20.5 4.9 1 23 139 161 139 161 0.97
7 45 0.00022 0.013 16.6 5.4 1 23 167 189 167 189 0.98
8 45 2.1e-06 0.00012 22.9 1.8 1 23 195 217 195 217 0.98
9 45 1.3e-06 7.2e-05 23.6 1.4 1 23 223 245 223 245 0.95
10 45 0.021 1.2 10.4 4.7 1 23 252 274 252 274 0.97
11 45 1.9e-05 0.0011 19.9 5.6 1 23 280 302 280 302 0.97
12 45 0.059 3.4 8.9 6.7 1 23 308 330 308 330 0.97
13 45 7.2e-07 4.2e-05 24.4 1.8 1 23 364 386 364 386 0.96
14 45 2.3e-05 0.0013 19.6 0.4 1 23 392 414 392 414 0.97
15 45 0.00064 0.037 15.1 4.8 1 23 449 471 449 471 0.96
16 45 3.4e-05 0.002 19.1 0.3 1 23 477 500 477 500 0.93
17 45 0.00053 0.031 15.4 8.0 1 23 506 528 506 528 0.98
18 45 0.01 0.59 11.3 6.0 1 23 532 554 532 554 0.97
19 45 2.1e-08 1.2e-06 29.2 0.5 2 23 561 582 560 582 0.97
20 45 0.00023 0.013 16.5 2.1 1 23 588 610 588 610 0.97
21 45 2.4e-06 0.00014 22.8 4.5 1 23 616 638 616 638 0.98
22 45 0.015 0.85 10.8 2.3 1 23 644 666 644 666 0.95
23 45 1.5e-06 8.5e-05 23.4 1.7 1 23 672 694 672 694 0.99
24 45 3e-07 1.7e-05 25.6 3.1 2 23 713 734 712 734 0.97
25 45 0.12 6.9 8.0 0.2 1 19 740 758 740 760 0.91
26 45 4.6 2.6e+02 3.0 0.1 13 23 772 782 770 782 0.90
27 45 0.0038 0.22 12.7 1.9 1 23 788 810 788 810 0.95
28 45 0.00015 0.0085 17.1 0.2 1 23 816 838 816 838 0.97
29 45 0.017 0.97 10.7 1.7 1 23 844 866 844 866 0.95
30 45 0.058 3.3 9.0 0.5 2 23 873 895 872 895 0.94
31 45 0.00012 0.0067 17.4 1.1 2 23 901 923 900 923 0.95
32 45 2.4e-07 1.4e-05 25.9 0.7 1 23 929 951 929 951 0.98
33 45 4e-05 0.0023 18.9 2.3 1 23 957 979 957 979 0.94
34 45 3.8 2.2e+02 3.2 5.3 2 23 1010 1029 1009 1029 0.90
35 45 0.00023 0.013 16.5 0.2 1 23 1035 1058 1035 1058 0.94
36 45 0.0014 0.083 14.0 0.5 1 23 1064 1086 1064 1086 0.98
37 45 0.17 9.8 7.5 4.7 1 23 1092 1114 1092 1114 0.93
38 45 0.0096 0.56 11.4 3.6 1 23 1120 1142 1120 1142 0.93
39 45 0.0062 0.36 12.0 2.3 1 23 1148 1170 1148 1170 0.96
40 45 0.047 2.7 9.2 0.4 2 23 1177 1199 1176 1199 0.92
41 45 2.4e-05 0.0014 19.6 2.0 2 23 1205 1227 1204 1227 0.95
42 45 8.7e-07 5e-05 24.1 0.6 1 23 1233 1255 1233 1255 0.98
43 45 0.0001 0.0058 17.6 3.3 1 23 1261 1283 1261 1283 0.98
44 45 9.8e-07 5.6e-05 24.0 1.6 1 23 1288 1310 1288 1310 0.97
45 45 0.04 2.3 9.5 3.1 1 13 1316 1328 1316 1329 0.93

Sequence Information

Coding Sequence
ATGTTTCCCCGCAAGGATGATCTTATTAGACACATCTCTAATCATGACAGCAATAactatccattccattgtcatgACTGTGGGGAGCGTTTCCatgaaaaatattcatttgaTGAACATATGATGCATAATCATAAACTCGATGTACTTTTTCCATGCGAAATTTGTAAAAAAGAATTTTCGTGTATGAAAGCTCTCCAATCACATATTGTGCGTATTCATAATGGAAAGCGTCAATTTTTTTGCAATGTTTGTGGAGAATTGTTTCCTCTCAAGGAGTCTCTTCGTAAACATAAATTGGTTCACaaacataaaattcaatatactTGTGATATTTGTGCGGAATCTTTTCCAAAGCCGTCTTTCCTAAGGAGACATAGATGGATGCATGCAGCAGATAAGTCACTACCCTTACATTCCTGTAATGTTTGTGGCAAATCATTTTCTCATAAAAGTAGACTTATCAAACATACAATTACGCACTCGAGAAAGCATTCTTTTTCTTGTGACATTTGTAAAACATCCTTTCGTTCTAAAGAATGCTTCAATAAACATATGAGCAGTCACACAGAAAATTTGCCATATTCATGCGATATTTGCAAGCAGTCATTTTCATCTAAAAGCAAACTTAATAAGCATGTACTTACGCACCTCGGAGTTCGTCCATTTTTGTGTAACATTTGTGGCAGATCATATTCTAATAAAAGCACCCTAAAAACACATGTTCGTAGTCACTCGGAGGAGGACCTTCCATTTTCTTGTGACAAATGCAATAAATCATTTCCTTCTCAACGTTTTTTTATTGGACACAAATGTAGTCATTCTAACAATCATCCATTTGCCTGTGACGTTTGCGACAAATCGTACAGGACTAAGTGTGACCTAAATAAACACATGTGTACTCACATTGGAAATAATCAGTATAGCTGCCATACTTGTAACAAATCATTTACGTGTAAAAACGAACTCGTTAAACATAGCCTCAGTCATAAAGATCAGGACATTAATTCTTCTGATATTTGTAAGCAATCATTTTCCGAAGAAGATCCTGTGAAAGAACACAAAGTTAGTCATTCTAATGGGACTATATTTTTCTGTGATGTTTGCGGTAAATCTTTTTCACAAAAGAGTAGTTTAAGCAAACACATTAATTTTCATAAAGGCGATTGGCCATTTTATTGTGAAATTTGTAGTAAATCATTTGCTAATAAGAGAGCTCTTAGTCGCCATGTGGACGTTCACAGAATGTATCAGTCATTAGCTACTGGCAACACACTAAATAAAGGTACGGACTGTACAGTTTTACCTGGAGAGAAGGAGAGTGCTGGACTTCTGGATCCTCAACATATCTGCAACATTTGTAACAAACTGTTTTCTCGTAAGCAGTGCCTTGTTAGACACATGTATATTCACAGCGGAGAACTTCGATTCACTTGCGATATTTGCGGGAAATCTTTTATTCAGAAGCAAACCCTCGAAGGTCATATAGTTTATAGGCACAGTGGGAAACCGCCATTTTCTTGCCATGTTTGCGAGAAGACATTTTCTTTTAAGCACGACTTCTATAAACATTTGCGTTCTCATAATCGTATGTTTTTCTGCAATCGTTGCGAACAATCATTTTATAGCAGTAAGGCCCTTCATAAGCACAAAAAGACACACTTAGGAAATCTTCAGGTTCCATGTCCTATTTGCAATAAAGTGTTTACTCAACAATTCAATCTAAACAAACATATGCGTTCCCATACGGGAGATCTGCCGTATTCGTGCGATGCGTGTGGCAAATCGTTTTCATGTAAGAGTAATCTTACGAGACATGCAGTTACGCATAGCAGAGATCGTTTGTTTTCGTGTAATATTTGTAACAAATCTTTTTCTCATAAGGATGGTTTTAATAGACATATGAGTAGACATGCTGGGGATTTCCCGCATTCTTGCAATGtttgtaaaaaaacatttttgtacaaaagtGAACTTGACAGGCATACAATTGGCCACACTGGCATTTATCCGTACACATGTAATGTTTGTAATAAACCCTTTGTAACTAAATCTCTCTTTAGTAAGCATATGCAGTCTCATAGTGAAACAGTTTTACTTGGAGAGAGCGAGAAAGCTGATCTTCTGGATCCTCTACAGTGTAAAATTTGCCACAAAACATTTAGCCGCAAGGACAGTCTCGCTAGGCACATGCTTAGTCACAATGAGAGGCGTCCGTTTTCCTGTGACATTTGTAGGGAATCGTTTATTCAGAATGAAACTGTTAAAGGACATTTTATGGATGCACCCACGGGCGAAATGTCAGATGCTATGAAAGAAGATTTAAATAGACACATGTGCATTCATACAAGAGGACAGCAGTTTCACTGCGATGTTTGCGGGAAATCGTATTTATACAAGAGTAGCCTTACTAAACATTCGGCAATACATCGTGAGAATCGTTCTTTTCCGTGTATGATTTGTCAAAGAGTTTATCCTTCTAAGGAAGGTTTGAAAAGGCATTTGATAAGACACTCTGGCAATATGCCTCATTCTTGCAATGTGTGCGAGAAATCATTTTTATACAAGTACGAACTGGATAAACATCTATTAGGGCACAATAAAGTTAATCCCATTTCCTGTTACATCTGTAACCAATCCTTTCCCGACCCTGAAGCCTGTAATAGACATACGCTATCCGAGCATGGGAAACTTCTTTTATCCTGCGACATTTGCGggaaatattttgttaataaacggTCTCTTGAAACGCATTTCAGGTATAGACATATAGAAGCTCTGCCATTTCCATGTGAAATTTGTGACAAATCATATCCAAAGAAGAGTTATTTGAAGAGACACATGAACGTTCATACAAAAGCTCTTCAGTATTCCTGTGATATTTGCAGCAAATCATTTTTCCATAAGAGCAGTCTTACTAGACATGAAGCTGCACATAATATGGGTTCTTTTTCGTGCGATATTTGTAAGAAGGTTTTACTTGGAGAGAAGGGGAAAGCAGTTCCGGGACATCTAGATACCCTCAACAAATGTAACATTTGCCACAAATCGTACACAGAGTGTCTCTCAAGTCACATGCTCAGACATGGgcagaaattacaattttcctGTAATGTTTGTGGGGAATCTTTTATTAGCAAACTTGATCTTCAAGTACATGCCATGTATAAACACACGCTTGAATTGTTGTTTACATGCCTGATTTGTTCGGATAATTTTGCTACGAAAGAATCTTTGGATAGGCACATGCTTACACACTCAAAAGACCCACAGTATCACTGCTATATTTGCAAGAAGTCATTTTTATATAAGAGCTCATATACTAGACATTCGGCTTTACATCGTGCGGATAATTCTTTTTCGTGTGAAATTTGTCATAAAGTTTTTCATTTTAAGGAAGGTTACCGTAGGCATTGGGGACTGCATTCTGGAAATTTGCCACATTCCTGCAATGTTTGTAAGAaatcatttttatacaaaaatgaaCTTGAGAAACATCTATTAGGGCACAGTAAAGTTGATCCAATTTCCTGTTACATTTGTAACAAATCATTTCGAGACACAAATGTTTCCATTAGACACATGCAGATTGAACACGGGAAGCTTCCATTGTCGTGCGACATTTGTGGGAAGTCTTTTATCGATAAACGGTGTCTTGAAACTCATTTGAGGTATAGACATAGAGATGAACTGCCATTTCCATGTGAAATTTGTGAGAAATCATATGCTAAGAAGAGTTACTTGACGAGACATATGAATGTTCATACAAAAGATCTTGTGTATTCCTGTGATGTTTGCAGCaaatcatattttcataaaagCACTCTCACGAGACATTTAGCTTCACATAGTGGAAATATTTTTGCATGCGATatttgtaaaaaagtattttcttacAAGGATACCTATGAAAGACACATGAAAACCCATGTCCCAGATAAACCATATACTTGCAATGATTGTAAGAAATCATTTCGaagaaaaaaaataaaaaacttactaAATGTTGCTTATCAATTTACACATTCCTTCCGTTCTTTTCTCTTCTAG
Protein Sequence
MFPRKDDLIRHISNHDSNNYPFHCHDCGERFHEKYSFDEHMMHNHKLDVLFPCEICKKEFSCMKALQSHIVRIHNGKRQFFCNVCGELFPLKESLRKHKLVHKHKIQYTCDICAESFPKPSFLRRHRWMHAADKSLPLHSCNVCGKSFSHKSRLIKHTITHSRKHSFSCDICKTSFRSKECFNKHMSSHTENLPYSCDICKQSFSSKSKLNKHVLTHLGVRPFLCNICGRSYSNKSTLKTHVRSHSEEDLPFSCDKCNKSFPSQRFFIGHKCSHSNNHPFACDVCDKSYRTKCDLNKHMCTHIGNNQYSCHTCNKSFTCKNELVKHSLSHKDQDINSSDICKQSFSEEDPVKEHKVSHSNGTIFFCDVCGKSFSQKSSLSKHINFHKGDWPFYCEICSKSFANKRALSRHVDVHRMYQSLATGNTLNKGTDCTVLPGEKESAGLLDPQHICNICNKLFSRKQCLVRHMYIHSGELRFTCDICGKSFIQKQTLEGHIVYRHSGKPPFSCHVCEKTFSFKHDFYKHLRSHNRMFFCNRCEQSFYSSKALHKHKKTHLGNLQVPCPICNKVFTQQFNLNKHMRSHTGDLPYSCDACGKSFSCKSNLTRHAVTHSRDRLFSCNICNKSFSHKDGFNRHMSRHAGDFPHSCNVCKKTFLYKSELDRHTIGHTGIYPYTCNVCNKPFVTKSLFSKHMQSHSETVLLGESEKADLLDPLQCKICHKTFSRKDSLARHMLSHNERRPFSCDICRESFIQNETVKGHFMDAPTGEMSDAMKEDLNRHMCIHTRGQQFHCDVCGKSYLYKSSLTKHSAIHRENRSFPCMICQRVYPSKEGLKRHLIRHSGNMPHSCNVCEKSFLYKYELDKHLLGHNKVNPISCYICNQSFPDPEACNRHTLSEHGKLLLSCDICGKYFVNKRSLETHFRYRHIEALPFPCEICDKSYPKKSYLKRHMNVHTKALQYSCDICSKSFFHKSSLTRHEAAHNMGSFSCDICKKVLLGEKGKAVPGHLDTLNKCNICHKSYTECLSSHMLRHGQKLQFSCNVCGESFISKLDLQVHAMYKHTLELLFTCLICSDNFATKESLDRHMLTHSKDPQYHCYICKKSFLYKSSYTRHSALHRADNSFSCEICHKVFHFKEGYRRHWGLHSGNLPHSCNVCKKSFLYKNELEKHLLGHSKVDPISCYICNKSFRDTNVSIRHMQIEHGKLPLSCDICGKSFIDKRCLETHLRYRHRDELPFPCEICEKSYAKKSYLTRHMNVHTKDLVYSCDVCSKSYFHKSTLTRHLASHSGNIFACDICKKVFSYKDTYERHMKTHVPDKPYTCNDCKKSFRRKKIKNLLNVAYQFTHSFRSFLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-