Bger027307.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blattella germanica
Gene Symbol
-
Assembly
GCA_003018175.1
Location
PYGN01000522.1:499066-526269[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 45 8.9e-05 0.0051 17.8 0.3 3 23 117 137 115 137 0.97
2 45 1.8e-05 0.001 20.0 0.5 1 23 143 165 143 165 0.97
3 45 0.13 7.3 7.9 0.3 3 23 173 193 171 193 0.96
4 45 0.00012 0.0068 17.4 0.2 2 23 200 221 199 221 0.97
5 45 0.0068 0.39 11.9 1.5 1 23 227 250 227 250 0.98
6 45 0.00015 0.0085 17.1 4.8 1 23 260 282 260 282 0.98
7 45 6.9e-05 0.004 18.2 0.2 1 23 291 313 291 313 0.96
8 45 9.5e-05 0.0055 17.7 0.2 2 23 320 341 320 341 0.97
9 45 9.4e-05 0.0054 17.7 5.5 1 23 347 369 347 369 0.96
10 45 0.00021 0.012 16.6 3.8 1 23 375 397 375 397 0.98
11 45 5.1e-05 0.0029 18.6 3.5 1 23 672 694 672 694 0.98
12 45 6.7e-05 0.0038 18.2 1.9 1 23 700 722 700 722 0.98
13 45 7.4e-05 0.0043 18.1 0.5 1 23 728 751 728 751 0.98
14 45 8.9e-07 5.1e-05 24.1 0.6 3 23 758 778 756 778 0.95
15 45 0.074 4.3 8.6 0.3 1 23 784 807 784 807 0.93
16 45 0.00015 0.0089 17.1 2.5 1 23 815 838 815 838 0.98
17 45 3.7e-05 0.0021 19.0 3.6 1 23 941 963 941 963 0.98
18 45 0.0016 0.09 13.9 0.3 1 23 969 991 969 991 0.98
19 45 0.037 2.1 9.6 0.2 1 23 997 1020 997 1020 0.97
20 45 0.0048 0.27 12.4 0.2 3 23 1028 1048 1027 1048 0.96
21 45 0.087 5 8.4 1.2 1 23 1054 1077 1054 1077 0.91
22 45 1.3e-05 0.00075 20.4 1.5 1 23 1085 1108 1085 1108 0.98
23 45 0.001 0.057 14.5 0.6 1 23 1230 1252 1230 1252 0.97
24 45 0.00091 0.052 14.6 4.2 1 23 1258 1280 1258 1280 0.98
25 45 0.025 1.4 10.1 3.3 1 23 1284 1306 1284 1306 0.97
26 45 0.58 33 5.8 5.4 1 23 1311 1334 1311 1334 0.98
27 45 0.00037 0.021 15.9 0.9 1 23 1344 1366 1344 1366 0.95
28 45 8.8e-06 0.00051 21.0 0.8 1 23 1372 1395 1372 1395 0.98
29 45 5.2e-05 0.003 18.5 3.7 1 23 1405 1427 1405 1427 0.98
30 45 0.028 1.6 10.0 3.6 1 23 1433 1455 1433 1455 0.90
31 45 1.6e-05 0.0009 20.2 0.6 3 23 1463 1483 1462 1483 0.97
32 45 6.2e-06 0.00036 21.4 1.1 1 23 1489 1511 1489 1511 0.98
33 45 0.0013 0.072 14.2 1.3 1 23 1517 1539 1517 1539 0.99
34 45 0.00011 0.0062 17.6 0.1 1 23 1617 1639 1617 1639 0.97
35 45 0.0082 0.47 11.6 1.2 1 23 1645 1667 1645 1667 0.97
36 45 4.2e-05 0.0024 18.8 1.0 2 23 1674 1695 1674 1695 0.97
37 45 7.3 4.2e+02 2.3 3.4 6 23 1704 1721 1699 1721 0.92
38 45 0.01 0.6 11.3 0.1 1 23 1725 1748 1725 1748 0.96
39 45 0.0016 0.093 13.8 1.5 1 20 1758 1777 1758 1780 0.93
40 45 0.011 0.63 11.2 2.7 1 21 1786 1806 1786 1809 0.95
41 45 1e-05 0.00059 20.8 0.4 2 23 1827 1848 1826 1848 0.97
42 45 0.00013 0.0072 17.3 3.6 1 23 1854 1876 1854 1876 0.92
43 45 1.4e-06 7.9e-05 23.5 2.1 1 23 1882 1904 1882 1904 0.98
44 45 3.2e-06 0.00019 22.3 3.0 1 23 1910 1932 1910 1932 0.98
45 45 0.0025 0.14 13.2 1.1 1 23 1938 1960 1938 1960 0.99

Sequence Information

Coding Sequence
ATGATTGCATGGTCGTCACAGCGACCCCGTGTTGGGAACAGACGTTATAGAAGTACAACACCCAAGAAATTAAAAGCAATCAAAGTAAATGCAAGGGACGACTTTGTTGGGAAAGGTTATGACAAGTCTTTTGATTGGATGGAATCATTTTCACTTCTATTTGACTCCTATTCAGACCAGGCAAATGGTAAAGAAGgcaatgaaaatataaatgataaaagaCACAGAAAGAAGCTGAATCAAAAATCAAAATGTAAGCCGAGAGTAAAGGAGAAGATTGCGAAACCTAAGCTGGAAAGTGTGACAAAGCCTAAAGCAAAGGAACAATCCTCCAGTAGCTCTATTGCTTGTGAGATTTGTGGTAAAATCTGCGCAACAAACAAGCAATTGAAAGTTCATATTTTGAGTCACAGTAAAATTCGACCATATGCTTGCGACATGTGTGGAAGAGCATTTAAGCGCCCGTATGAGGTGAAGAAACATAAGAAAATACACACTGAAGAGAAGGATCAAATTTGCGATATATGTGGGTATGCAAcgctgtataaaacaaatctcGAGATCCACAAGAAACGACATTATGGTCACTATACGGTAAAGTGCGATACTTGCGGAAAGGGATTCTACTCCAAGGCAGAATTGGAGGAACACAAAAATGTCCATACCGGTAAAAGGCCTTTTCAGTGTGACGTGTGTGGGAAAGACTTTTTATATAGGAACAATTTGAGCTATCATAAGAAGACTGAACATCCGGATGTTAGTTGGGACCCTAAACGTCATCAGTGCGAGTTCTGTAACAAAATTTTCAAGAGTAAGAAGCTTTTGCAATCACATTTAAAATCTCATGCTGGGATAAAGAAGCCGAAAGCATTCTTGTGCGATATTTGTGGAAAAGCGGTGACGAGCAGGACTTCCCTTGTGGCTCATACACGCACTCACACGGGCGAGAAACCAAATGTGTGCGATGTGTGCGGTAAGGCATTCGGAAAATTGGACTATCTTCGGATTCACAAACGAACGCACACCGGCGAACGGCCTCACCATTGCGACCAATGTGGCAAGTCTTTCACGCAACTCTCTACgctgactgtgcacaaacgctaTCACACGGGCCAGCGTCCGTATCACTGCACCATTTGCAGTAAAGACTTTGTTACAAAAACACTTCTTAATACTCATCAGAAGAGCCATGGCATGTCTTTGGGAGTACTGACTGCTGGAATCTCCAAATCTTTAGTACCGGATTCAAAATGTCAATTATTCTATATTTTGTCCCCAGTTGCAAATCAGGGTCTCGTAGTAGATTCAGGAAATACTGGTCTTGCTAAAAACAATTCCTTTACATCACCTTTTGTACCAAATAACCCATCTGTAATTGGCAGTCCATTGATTGTAAACCATTTACCTACGAATAGCGGACCTTTGTATGGACAAGGAAATACATTGTTGCTTAATTCTATGGCTTCTAGAGGTTCCTTTGTTCCTCTTAACAACCAGTCTTCTGTGGCAAAACCAATTTTACTTCTAACTACACAGCAAACTGGCCGGACACTAAACACAGAATCAAGTGGTAATCCACTACTGTCAAATAGTAGTAATGTGCAAGTATCCAACACTttgcataggcctaatacagTTGTTAGCAAAGGTTTAGATGAACATGTGAAGATTGAACCTTTAGATAAACCATCAACTGATGCCAATACTGTAGAAACAGCATGTCGAATTGAAAGAATTGAATCTCTTGGATTAAACTCCATACCGCATGAACATGTGAAGATTGAACCTCCAGATAAACCATCATCTGATCCCATTACTGATGAAAAAGCACATCGAATTGAAATAATTGAGTCTCTTGCATTAAACTCTGTACCGCATGAACACGTGAAGATTGAACCTCTTGATAAACCATCAACTGATCCCATTACTGATGAAAAAGTACGTCGAATTGAAAGAATTGAGTCTCCTGCATTAAACTCTGTACCGCGTGAAGAATTACCGGTTTCTACTGATCATAGTTGTGAAGTTTGTGGCAAAGTTTTTTCATTGAAATGCAAGTTAACAGCCCACATAAAAACTCATAGTCGTGACCGTCCATTTGAATGTAACGTCTGCAGTAGACGTTTTAAACGAGTGTATGATTTAAAGAATCACCAACAATTACATTCGGATGTTAAGAATTTCAAATGTGACATTTGTGGATACGGTCTAATTAATAAATCACTCTTAAGAGCACACAAGAGGCGACAGCATGAGTTCATTTCTCAAATCTGCAATATATGTGGTAAAGCATTTACTACTAAAACATCCCTTACTCGACATATGGATCTTCATGCAGGTGTTCTTAAATTCTTGTGTGAGACTTGCGGGGCAGGATATCCCACGAAAACCAGTTTCGTGGCGCATCGAAGTAGCAAACACCCACAAATGTCTGCATTTACTTTCAAATGCAAAGTGTGTGGACGAAGCTATCCAACAATTCACTTGTTTAATGCACATATGCAGAAGAAGCATTCAAAAGAGAACATCGGGAAAGAGGAGaacgaagaagaggaagaggaggagCTGGTGAGAAATAAGAAAAGAAAGCGAAAGAAGCATAAACCATCATCTGATCCCATTACTGACGAAAAAGCATGTCGAATTGAAAGAATTGAGTCTGGTCCATTAAACTCTGTACCGCATGAACACGTGAAGATTGAACCTCTAGATAAACGATCAACTGATCCCATTACTGATGAAAAAGCACGTCGAATTGAAAGAATGAAGTCTCTTGCATTAAAGGCTGTACCGCATGAAGAATTACCGGTTTCCACAGATCATACTTGTGAAGTTTGTGGCAAAGTTTTTTCATTGAAATGCAAGTTAACAGCCCACATAAAAACTCATAGTCGTGACCGTCCATTTGAATGTAACATCTGCACTGGACGTTTTAAACAATTGTGGGCTTTAAGGAAGCACGAACAAGTACATTCGGATGTTAAGAGGTTCAAATGTGACATTTGTGGATATGGTGCAATTTATGAATCGGTCTTAAAAGCACATAAGAAGCGACGGCATTCTGTGTCCATTTCTCAATTCTGCAATACATGTGGTAAAGGATTTTATGATGAGATAGCCCTTTCTCGACATAAGGAAATTCATTCCAGTGCTCGTAATTTCTTGTGCGAGACTTGCGGGGCAGTATATCGCACGAAAAACAGTTACATGTATCATCGAAGTCAGAAACACCCAGAATTGTCTGTATTTACTTACAAATGCAAAGAGTGTGGACGGAGCTTTCCAACAATGCAGTTGTTTAATGCACACATGCAGAAGAAACATTCGAAAGAGAACATGGGGAAAGAGGAGaacgaagaagaggaagaggagcTGGTGAGAAATAAGAAAAGAAACAGAAAGAAACGGCTTTTGATGTGCGCGCCTGAAGCAGTCACTCGAGGTCATGGAGGTGACAGCTCTTCCAATCCTGCGCCACCCTCAATAAAGTTAGAAGATAAACTAATTTCGAGCAAACAGTGTTGGAAACTATTTCCGGAGTCTCAGTTGCAAGTTGATACCATGTTCCATGATACATATGACATGGATGCTGCCATCAAAGTCGAAGTCAAGATGGGCTCTGATAATGAAGTTGCTGAATCCGAAGATTACTCGTTGACTTATAATGAATCTGGAGAAGCGCATCCATTCGCATGCAGTTCATGTCCAAGAAGATTCAAGAGATCTCGAGACGTAATAGTACACGAGAGAACTCACGGCAAACCGGTTGCTCACAAATGCGACATTTGTGGATATACAACAACTGACAGTTTTTATTTCAAGATACACCAGAAAAGACATGAACAGCAGTTTAATTGTGATGTTTGTGGGAAGGGCTGCCACTCACAAAACAAACTCGAAGCTCATAAATCTTCTCATGGTGACATGCCGTTCCGCTGCCTAATCTGTGATAAGCAATATGCGTGTAAGAAAACGCTGTTCAATCATAAGCGGATGTTCCATTCTGATGCAGATGAAATGGCTAAATTCCACTCTTGCGATGTTTGTGGAAAGGCTTTTCCAAAGAAATCTTCATTATTATATCACAGTATTTCTCATTCTGGTGAGAAACCGTATAAATGTGATAAGTGTGACAAAGCATACCCGTATAAATATAATCTAGCTGCTCATAAAAAAACTATACATTCTGAAACACCGACTGAAAAAGTTCGACATCAATGCGAAATGTGTGGGAAGACTTACGCTCACAAAAGGTCACTTCTTCTTCACATGAATTCTCATACTGGCGCCAATGTGTATATATGCGACGTGTGTGGAAAATCGCTCTCGAATAAAGACCATTTGAAATTCCACTGCCGCATCCATACGGGCGAGAAACCCAATATTTGTGATATTTGCGGCAAATCATTCAGTAAACCTTTTGACATGAAGCAGCATCGGAGAATTCACACCGGTGAACGTCCCTACAAATGTGATATGTGTCCGAAGGCATTTACTCAGCGATCTACGTTAGTGATTCATAAGCGGTATCATACTGGCCAGAGGCCTTATCAGTGCGAATTATGCGATAAGGATTTTGTGTGTAGAGCATTACTCAATGTTCATATGAAAAGTCACACTTCCAAAAGTGATATTGTTATAATTCAGTCTGCCTCTGAAGCGTTGAGCGAAAAGAAAAAGGCCGTAGTGTCGACAAGAAGTAAGAGAAGACAAAAGAAGTTATCGATGTGTGAACTCTGTTGGACAGAAGTTCCCGAAATCGACCTACAAGCACACACGATGATGCACTTCCACCTACAGGTAGACACGGTTGTGAAGGTGGAAATTGATTCAGACTCTGAAAAACAATTCAAGTGCAGTGATTGTGGGAAGATGTTTGAGACCGGAGAAATGTTAGCTATTCACATGACGGCTCATACGGAATCTTTTCCATATTCATGTAATGTGTGCAATGACAAATTCAGAACACAGAAAGGATTGAAGCTGCATAAAGAAATTCATTCAGAAGAAAAGAGAGCCGTCTGCGACATTTGTGGCTTCGCCACAACTCGTCAAAGATATTTGAAACGTCATTATCGGACACATACTTACCCTCATAAGTGCATTCCTTGCAACAAGACATTCCGCTGTAAGACCGATTTGAGAAAACACGCTGTCGTGCACAAAAAGAAGTTCAAGTGCCCAGGCTGCGAACTCGAGTTCGCTGATCGGAAAGATATGTTAGAACACAAGAAACTTGTTCACCCTGATCTTCCGGATAAAATTAAGGAACACAAGTGTACGATTTGCGGCAAGGAATTCATGTATCGATCTACTCTATTACTGCATCAACCTTCTCACACAAACGACAAGTTATTCAAGTGCGATGAATGCGACGCAACATTCCGCTACAAACAAGGTTTATATGCACATAAACGCTGTGTGCATCCGGACAAGGATTTTGATATGTCGAGAGACCCAAACTTTCAAGGTTCTAACCAGTGTGAAATCTGCGGTAAAACATTCCCATATAAGAATTCTTTGCGCGTTCATGTCAATTCCCACACACGGGCACATCTTTATGCCTGCGACGTGTGCGGAAAGTCGTTCAGCACGCGTGATCACTTGAAATACCACTGTATGATTCACACGGGAGATAAAAGTTACCATTGCGAGGTGTGCGGAAAATCCTTTATCAAAAGTTGGGATTTGAAGCAACACCAACGAACCCACACGGGAGAACGTCCCTACCAGTGTGAAATATGTCACAAGGCATTCACACAGCGTTCTACACTTACTATACATAAGCGTCTTCATACGGGACAGCGGCCATATCAGTGCGATATGTGCGGGTTAGATTTTGTATGCAAGGCTCTATTGACTGTACATCAAAAAACACATGCCAAAGCCGTGGAGGATGAAAATGAtgcataa
Protein Sequence
MIAWSSQRPRVGNRRYRSTTPKKLKAIKVNARDDFVGKGYDKSFDWMESFSLLFDSYSDQANGKEGNENINDKRHRKKLNQKSKCKPRVKEKIAKPKLESVTKPKAKEQSSSSSIACEICGKICATNKQLKVHILSHSKIRPYACDMCGRAFKRPYEVKKHKKIHTEEKDQICDICGYATLYKTNLEIHKKRHYGHYTVKCDTCGKGFYSKAELEEHKNVHTGKRPFQCDVCGKDFLYRNNLSYHKKTEHPDVSWDPKRHQCEFCNKIFKSKKLLQSHLKSHAGIKKPKAFLCDICGKAVTSRTSLVAHTRTHTGEKPNVCDVCGKAFGKLDYLRIHKRTHTGERPHHCDQCGKSFTQLSTLTVHKRYHTGQRPYHCTICSKDFVTKTLLNTHQKSHGMSLGVLTAGISKSLVPDSKCQLFYILSPVANQGLVVDSGNTGLAKNNSFTSPFVPNNPSVIGSPLIVNHLPTNSGPLYGQGNTLLLNSMASRGSFVPLNNQSSVAKPILLLTTQQTGRTLNTESSGNPLLSNSSNVQVSNTLHRPNTVVSKGLDEHVKIEPLDKPSTDANTVETACRIERIESLGLNSIPHEHVKIEPPDKPSSDPITDEKAHRIEIIESLALNSVPHEHVKIEPLDKPSTDPITDEKVRRIERIESPALNSVPREELPVSTDHSCEVCGKVFSLKCKLTAHIKTHSRDRPFECNVCSRRFKRVYDLKNHQQLHSDVKNFKCDICGYGLINKSLLRAHKRRQHEFISQICNICGKAFTTKTSLTRHMDLHAGVLKFLCETCGAGYPTKTSFVAHRSSKHPQMSAFTFKCKVCGRSYPTIHLFNAHMQKKHSKENIGKEENEEEEEEELVRNKKRKRKKHKPSSDPITDEKACRIERIESGPLNSVPHEHVKIEPLDKRSTDPITDEKARRIERMKSLALKAVPHEELPVSTDHTCEVCGKVFSLKCKLTAHIKTHSRDRPFECNICTGRFKQLWALRKHEQVHSDVKRFKCDICGYGAIYESVLKAHKKRRHSVSISQFCNTCGKGFYDEIALSRHKEIHSSARNFLCETCGAVYRTKNSYMYHRSQKHPELSVFTYKCKECGRSFPTMQLFNAHMQKKHSKENMGKEENEEEEEELVRNKKRNRKKRLLMCAPEAVTRGHGGDSSSNPAPPSIKLEDKLISSKQCWKLFPESQLQVDTMFHDTYDMDAAIKVEVKMGSDNEVAESEDYSLTYNESGEAHPFACSSCPRRFKRSRDVIVHERTHGKPVAHKCDICGYTTTDSFYFKIHQKRHEQQFNCDVCGKGCHSQNKLEAHKSSHGDMPFRCLICDKQYACKKTLFNHKRMFHSDADEMAKFHSCDVCGKAFPKKSSLLYHSISHSGEKPYKCDKCDKAYPYKYNLAAHKKTIHSETPTEKVRHQCEMCGKTYAHKRSLLLHMNSHTGANVYICDVCGKSLSNKDHLKFHCRIHTGEKPNICDICGKSFSKPFDMKQHRRIHTGERPYKCDMCPKAFTQRSTLVIHKRYHTGQRPYQCELCDKDFVCRALLNVHMKSHTSKSDIVIIQSASEALSEKKKAVVSTRSKRRQKKLSMCELCWTEVPEIDLQAHTMMHFHLQVDTVVKVEIDSDSEKQFKCSDCGKMFETGEMLAIHMTAHTESFPYSCNVCNDKFRTQKGLKLHKEIHSEEKRAVCDICGFATTRQRYLKRHYRTHTYPHKCIPCNKTFRCKTDLRKHAVVHKKKFKCPGCELEFADRKDMLEHKKLVHPDLPDKIKEHKCTICGKEFMYRSTLLLHQPSHTNDKLFKCDECDATFRYKQGLYAHKRCVHPDKDFDMSRDPNFQGSNQCEICGKTFPYKNSLRVHVNSHTRAHLYACDVCGKSFSTRDHLKYHCMIHTGDKSYHCEVCGKSFIKSWDLKQHQRTHTGERPYQCEICHKAFTQRSTLTIHKRLHTGQRPYQCDMCGLDFVCKALLTVHQKTHAKAVEDENDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-