Bger013893.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000173.1:1296635-1452629[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-06 0.002 18.4 0.0 3 30 18 45 16 46 0.96 2 2 9.3e-07 0.00075 19.8 0.0 11 34 73 96 72 101 0.94
Sequence Information
- Coding Sequence
- ATGAAaTGGCTCCTGTACAATCAAAACCATCTCGAAAAAAAGTGGGATGTTGATGCCATGATGAAGGCTGTCGAAGTTGTGCTGAACAAAGAAATGGGGGTTTTGAAAGCGTCTAAAGCTTTTAAAGTACCAAGAATGCCTAGAACTAATCCTATATATACTACAAAGGAAGCTAGGAAGCGATGGAAAGAAGAGGATACGGAAATAACCAATATTGCAGTTAGGGAGAATAAAATGGGAACTCTAAAAGCAAGTAACACTTTCAGTGTGCCTCGTACAACTCTTCAGGCGTTAACATCTGCAATCGAGGTAGAGAAGACATGCAACTCACCTTCTCAGAATCCACAACCTTCAACTTCGTCCACTGAACAATCAGTTCATCCTCCTTCTCCAGCTCCTCAACAGCTTCAGTCAACATCAAAACCATTCCTATCATCTCAAAACGTGCCTTCAATAGAGGTCGCAAGTCTGCAGGTTATCACTGGAACGCCATATAAACAAGCGTTGACGGCATCTATGGAAGCATCTGCTCTCACTAATAGCAAGAAGAAATTGAAGTTTGATGACAatcaagaaagaaagaataatcgGGAGATATCAAAAGCCCAAAGTGGGCAAGCGTCAACCAGTGGAACCTCAAAAACAAGAAGACGACCTAAACACATTCTGGAGTCCTCAGAATCAGAAGATAAGGTTGCTGATATGGAACCTCTTCTAAATGATGAGAGCTATTTTGAAATGCCGACAGGAGATTATCCCAAGGGAAAGTATGCAAATTGTCTGTTCTGCGATGGACTCTTCTGTGAAGCAAGTGTAGAATATGGGCACACAGTGAATGTGCAGGTGCAGATACTGAATATTACATTTGTGATTTTTGTAAATAGCCACACAAACATTTTCAAAAAGGTACCGATATGGGAAGGTTCAGCTGCTGCTCTTCTTGTAGTACACTTTCTATCTGGTTCTCAGCGCCAATTTGAGGACAATTCTCCAAATTTGGACGTGGCACAATTTGAATGCCGGATGCAGTTAAATCTACATACAACTCAGGGAGTCACAGCGCTCACAGTTTATAGTGGAAGATGCATGAGCGAGAGCGGTGGAAGGTCATCCCGTCTGCAGAGAAGAAGCTATCCATTGAAGACTTGGTCTTTTGGAGGAGCACCTCAATGA
- Protein Sequence
- MKWLLYNQNHLEKKWDVDAMMKAVEVVLNKEMGVLKASKAFKVPRMPRTNPIYTTKEARKRWKEEDTEITNIAVRENKMGTLKASNTFSVPRTTLQALTSAIEVEKTCNSPSQNPQPSTSSTEQSVHPPSPAPQQLQSTSKPFLSSQNVPSIEVASLQVITGTPYKQALTASMEASALTNSKKKLKFDDNQERKNNREISKAQSGQASTSGTSKTRRRPKHILESSESEDKVADMEPLLNDESYFEMPTGDYPKGKYANCLFCDGLFCEASVEYGHTVNVQVQILNITFVIFVNSHTNIFKKVPIWEGSAAALLVVHFLSGSQRQFEDNSPNLDVAQFECRMQLNLHTTQGVTALTVYSGRCMSESGGRSSRLQRRSYPLKTWSFGGAPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -