Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: -
Assembly: GCA_905147135.1
Location: LR990068.1:9166086-9173436[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.29 27 6.5 5.3 2 23 154 175 153 175 0.96

2 11 0.00064 0.058 14.9 4.6 1 23 181 204 181 204 0.95

3 11 0.00081 0.073 14.6 2.8 1 23 216 238 216 238 0.99

4 11 0.027 2.4 9.8 2.4 1 23 244 266 244 266 0.99

5 11 0.15 14 7.4 3.7 1 23 272 295 272 295 0.94

6 11 0.088 8 8.2 4.9 1 23 446 469 446 469 0.98

7 11 0.078 7.1 8.3 0.3 1 21 477 497 477 498 0.94

8 11 0.23 21 6.8 4.4 2 23 506 527 505 527 0.97

9 11 0.00066 0.06 14.8 4.7 1 23 530 553 530 553 0.94

10 11 0.033 3 9.5 0.1 2 23 559 580 558 580 0.91

11 11 0.00083 0.076 14.5 1.1 1 23 586 609 586 609 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.29	27	6.5	5.3	2	23	154	175	153	175	0.96
2	11	0.00064	0.058	14.9	4.6	1	23	181	204	181	204	0.95
3	11	0.00081	0.073	14.6	2.8	1	23	216	238	216	238	0.99
4	11	0.027	2.4	9.8	2.4	1	23	244	266	244	266	0.99
5	11	0.15	14	7.4	3.7	1	23	272	295	272	295	0.94
6	11	0.088	8	8.2	4.9	1	23	446	469	446	469	0.98
7	11	0.078	7.1	8.3	0.3	1	21	477	497	477	498	0.94
8	11	0.23	21	6.8	4.4	2	23	506	527	505	527	0.97
9	11	0.00066	0.06	14.8	4.7	1	23	530	553	530	553	0.94
10	11	0.033	3	9.5	0.1	2	23	559	580	558	580	0.91
11	11	0.00083	0.076	14.5	1.1	1	23	586	609	586	609	0.97

Sequence Information

Coding Sequence: ATGACTTCCAAGTTTAAAAATGAACCAGAAACATTGACGAACACTAACCCAGAAGACGTGATTGAAAATGAATCGGACAACACGATTACAAATAACCAGAAAAATGTGGTGGATGGTAATTCCGATGACATGATTAGCCCAGAAGACCTGATGCAAAATGATACAGAAGACCAGAAAAATAACTCGGAAGAAATGATGAGTATGTTCGCTAGTGTTTGGGTGAAGGTGGAGGTGGAGGAGTTGCCGTCTGAAGAAGAACAGGATTCCTTGCAAGACAATACATTCGACGAAGAACAGGAGTCACCGCAGGACAGTTCTTCGAAGGGAGACCAGGAGCAAACTCAGGACGTTGATATAGATGATGAAACCGGGACAGCACAAAAAAGAACCTTGCGAAAGAGGCAGCCACCGCCTACAAAACGTAAGTCGTGGAGAACGAACTACCGGACCGAACAACTGCAGTGTACCTTATGCAACTACAAGACTATGCACAAGAATTGTTTCAAGGCCCACATGCTGGGCCACGACAACTTGAAGCCCTATTCCTGTCCACATTGCGACTACACCACAAAATTCAGTACCTCACTACAAAGACACACGTACATGAAGCATAACGCACTAGTGGAAAACAACTCTGGAGAGCTGTACAAATGCGATCAGTGCGAATATTCGACATTCCTGAAATGGAACCTGAAATCGCATCAGCGCAAACATGTGCCAGAGAAACAGTTCAAATGTACGCTGTGCCCTTTCGTCACAGCGTACGGCCATAGCTTCAAGAAGCATGCGCGAATGCATGCCAACGAGAAGGGATTCGAATGCGACAAGTGCCCCTTCAAAACGAAGTACCAAGGCCATATACACAGACATCTAACGCTGATACATAAAGAAGTGTTGGAGAAGGCGAACGTCTGCGAGTTCTGTCAGTTCTCGACATTGGAGAAGTGGCGGTTGAACTCCCATAAGCAGCGCAGTAAGAAGGACTACCCTCTGTCCTGCATGCACTGCCAGTTTCAAACGTTCTACCGCTGCGAACTGAAGAACCATACGAACATGTCCCACTACAAAGAAGCGCACGAAAAAGGCTCTGTCATGGTGAAAGTCGGGATGGATATCGAGGATGTGGTGAACAAAGTTGTGATCGGTCAACAGATTCCTCTAGAAAACACCGTGGAAGATATTGTCAATGAGGAATCTGAGGCGAAACCTGATGAAAAACATGATTCCAATGACGACGAAGAAGTACCGTCGAATGATTACTCGTACGACCCAGAGGCGTTGAAGATGAACTGGCGGTCGATACCCGTAATCGACGCTAGGAAGGAAGAGAATCAATACCAATGTACGCTATGCAACTACGCGTCCAAGTTCAAATGCTCAGTCCAGCGACACTACCAAAGACTCCATACAAGTGTTAAAGACCGCCCATACAAATGCAACTTCTGCGCGTGGACCACAAAAACTAAGGACCAAATAGTTCTACACGTGAAACGCAGCAAATCCAACGTGATACAGTATTGTACAGTTTGCAGCTACAATACTAAATACAAGTGTCTATACGTCAATCATATGAAGAAACACAACACTTTTAAGTGCTCCACGTGCGACTATACTTGTAAGAACAAATATGACTTGTCGAGACACTTTGGTACGGTGCATTTGGGGGTTGGCTTGAAATGTCAGTACTGCGATTATGTGGCAGCGAGGAAGGATTCTCTGCTAGGACATGAGGCAGGGCATACAGGCGTGAAGCCGTACAGCTGTTCGCAGTGCGATTTCACCACAATCAGGAAGGGTAAGTTGGAATCTCATGTGCGGAACACCCATATGGTGGAGGAGGATACGGATGCAAAGTAA
Protein Sequence: MTSKFKNEPETLTNTNPEDVIENESDNTITNNQKNVVDGNSDDMISPEDLMQNDTEDQKNNSEEMMSMFASVWVKVEVEELPSEEEQDSLQDNTFDEEQESPQDSSSKGDQEQTQDVDIDDETGTAQKRTLRKRQPPPTKRKSWRTNYRTEQLQCTLCNYKTMHKNCFKAHMLGHDNLKPYSCPHCDYTTKFSTSLQRHTYMKHNALVENNSGELYKCDQCEYSTFLKWNLKSHQRKHVPEKQFKCTLCPFVTAYGHSFKKHARMHANEKGFECDKCPFKTKYQGHIHRHLTLIHKEVLEKANVCEFCQFSTLEKWRLNSHKQRSKKDYPLSCMHCQFQTFYRCELKNHTNMSHYKEAHEKGSVMVKVGMDIEDVVNKVVIGQQIPLENTVEDIVNEESEAKPDEKHDSNDDEEVPSNDYSYDPEALKMNWRSIPVIDARKEENQYQCTLCNYASKFKCSVQRHYQRLHTSVKDRPYKCNFCAWTTKTKDQIVLHVKRSKSNVIQYCTVCSYNTKYKCLYVNHMKKHNTFKCSTCDYTCKNKYDLSRHFGTVHLGVGLKCQYCDYVAARKDSLLGHEAGHTGVKPYSCSQCDFTTIRKGKLESHVRNTHMVEEDTDAK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00208346;
90% Identity: iTF_00208346;
80% Identity: -