Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: -
Assembly: GCA_905147135.1
Location: LR990062.1:3507465-3518539[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3 2.7e+02 3.4 0.2 2 19 344 360 343 364 0.69

2 8 0.0025 0.23 13.0 1.7 1 23 372 394 372 394 0.97

3 8 0.0077 0.7 11.5 0.2 1 23 414 437 414 437 0.96

4 8 3.7e-05 0.0034 18.8 0.5 2 23 448 469 447 469 0.94

5 8 0.00039 0.036 15.6 1.2 1 23 475 497 475 497 0.95

6 8 7.6e-05 0.0069 17.8 2.3 2 23 504 525 504 525 0.97

7 8 3.6e-06 0.00033 22.0 2.9 1 23 531 553 531 553 0.97

8 8 0.0041 0.37 12.4 0.0 1 22 559 580 559 580 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3	2.7e+02	3.4	0.2	2	19	344	360	343	364	0.69
2	8	0.0025	0.23	13.0	1.7	1	23	372	394	372	394	0.97
3	8	0.0077	0.7	11.5	0.2	1	23	414	437	414	437	0.96
4	8	3.7e-05	0.0034	18.8	0.5	2	23	448	469	447	469	0.94
5	8	0.00039	0.036	15.6	1.2	1	23	475	497	475	497	0.95
6	8	7.6e-05	0.0069	17.8	2.3	2	23	504	525	504	525	0.97
7	8	3.6e-06	0.00033	22.0	2.9	1	23	531	553	531	553	0.97
8	8	0.0041	0.37	12.4	0.0	1	22	559	580	559	580	0.96

Sequence Information

Coding Sequence: atggaTGAAATTTGTCGATTGTGTTGCTCTTCAAATTTcgtaaacaattatatttttgatGAGGAAAATGCGCTATACCTCAAAATGTCCCTTTATCTGCCTATCAAGGTGTTCAAGAACGACCGGCTTCCGCAGAAGGTGTGCGACAAGTGCAGTTGCAAGGTCAACGACTTCTACCAGTTTTGCAATGAAACCATCGAGGTGCAGAACAGGTTGAGAGCTGTTCTAATTTCTACTGCAGTTGTTGTGGAGGATTCCGTAGATCTAACTCTGATAAAAGAGAATAATTTGTCTCCACTCCCCGCCTCAAACTCTATGCTGGGATTAGATACCAATATAGTGCATAAGACTGAACCTAATTTAGATCACAGTACTGATCAAGTTGAGCATAAAACGGAAAAATGTCCAAAGTTACAGCCATTCCCTGTCCACAACCCCGGTGTATCTGTTGGCACCCAGACAGACAACAATACACCTGAACATGAACGTGAACCTGAACCGGAACCTGTTTCAagtgaaataaatatagatgTACCTCTGTATAAAAATGTCAAGATCAAAGAAGAACCACAGCAGCCTGTCAAGATAGAAGATCTGTTCCCACCCgataattactataatattcCGGAAccgtctgatgatgatgacagggaCGATAATGTCTCACTCGCCAattacacaaagaaaaaaaagaataagaagACTGCAAATGGGAATGTCGAAAAGAAAAAGAGAAAACCAAAGATTAAGGAGTGGGAAGCCCTAATGCGTGCCCTGCCAGGCGACGCCGCCCTGGACCGGGTGAAGCGCGAGCCTTCCGAGGCGGAGGGGGAGGGCGAGTCGCCGCTGAAGACCGAGCCCGAGGAGTTCCATTGCTGCATGTGCTTCGTACAGTGCTACTCGAGGGCGGAGATGCTGCAGCATTATAAAAAACGTCTGTCCGTCCGTGTCAGGGAGCATGCGCGGGACTCCGAGGAGTGGGCGTCGGCGCCGCCAGCCGCGCCGCCACCGCCAGACGCCGACCCGCTCAAGTGCCCACGGTGCCAGAAGCGTCTAGAGCGAGCGGCGTGGTCCTCCCACTGGCTACGTCACTGGGAGCGCGACCGGCGGCCGTACCGATGCGCGCTCTGCGAGAAATCTTTCCGGGACCACCAGCAGATACTGAAACATGGACTCTCCCATCGGGACGAAGGCGGAAGAGTGGGCCCGGGCGGGCCGGGGCTGACTGACGCGAAGCGATACGTCTGCGACCTGTGTCCGGAGGGATTCGTTTATATGCGGTACCTGCTAGCGCACCGCACGCGCTCGCACCCGGAGGCGGCGGGGCGCGCGCTGGCGCTGCGCTGCGCCGTCTGCGGACGCACCTTCGCGCATCTCAACTCGCTAAGGAGACACCTAGCGGCACACTCCGGCGAACGCAACTTTCTCTGCAACGTGTGCGGCAAGGCGCTGTCGTCGCGGGAACACCTCAAATTCCACATCCGGATACACACGGGCTACAAGCCCAACGTGTGCAAGACTTGCGGGAAAGGTTTCGTGAAGAAGTGCAACCTGACCCTGCACGAGCGCGTGCACAGCGGCGAGAAGCCGCACGTGTGCTCGCACTGCGGGAAGGCCTTCTCGCAGCGCTCCACGCTCGTCATACACGAGAGGTACCACAGCGGCGCGCGGCCGTACGTGTgcgggctgtgcgggcgcggGTTCGTGGCCAAGGGGCTGCTGTCCATGCACCTCAAGACTACATGTATCTAG
Protein Sequence: MDEICRLCCSSNFVNNYIFDEENALYLKMSLYLPIKVFKNDRLPQKVCDKCSCKVNDFYQFCNETIEVQNRLRAVLISTAVVVEDSVDLTLIKENNLSPLPASNSMLGLDTNIVHKTEPNLDHSTDQVEHKTEKCPKLQPFPVHNPGVSVGTQTDNNTPEHEREPEPEPVSSEINIDVPLYKNVKIKEEPQQPVKIEDLFPPDNYYNIPEPSDDDDRDDNVSLANYTKKKKNKKTANGNVEKKKRKPKIKEWEALMRALPGDAALDRVKREPSEAEGEGESPLKTEPEEFHCCMCFVQCYSRAEMLQHYKKRLSVRVREHARDSEEWASAPPAAPPPPDADPLKCPRCQKRLERAAWSSHWLRHWERDRRPYRCALCEKSFRDHQQILKHGLSHRDEGGRVGPGGPGLTDAKRYVCDLCPEGFVYMRYLLAHRTRSHPEAAGRALALRCAVCGRTFAHLNSLRRHLAAHSGERNFLCNVCGKALSSREHLKFHIRIHTGYKPNVCKTCGKGFVKKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVIHERYHSGARPYVCGLCGRGFVAKGLLSMHLKTTCI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00208319;
90% Identity: iTF_00208319;
80% Identity: -