Blac017702.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blastobasis lacticolella
Gene Symbol
-
Assembly
GCA_905147135.1
Location
LR990050.1:19883387-19906762[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.011 1 11.0 6.2 1 23 406 429 406 429 0.96
2 7 0.0038 0.35 12.5 0.7 1 23 600 622 600 622 0.97
3 7 8.6e-06 0.00078 20.8 0.7 1 23 627 649 627 649 0.97
4 7 1.4e-06 0.00013 23.2 0.9 1 23 655 678 655 678 0.95
5 7 1.2e-06 0.00011 23.5 1.7 1 23 684 706 684 706 0.99
6 7 4.6e-05 0.0042 18.5 3.3 1 23 712 734 712 734 0.99
7 7 2.2e-06 0.0002 22.6 3.0 1 23 740 762 740 762 0.99

Sequence Information

Coding Sequence
ATGAGGAACGTGGATTCCCGACTCCTGATGGAGAAAATGGATGAAGTGAGACAATGCAATAGCGCCCACCAAGCGGGCGAGACAGTACATGTAGATGCCAACAGCCTGGCTCTGAATGTAGATAGAGTGACTGTGATGCACGGCCAAGGATATAGCTCTCAAATGAGCCGGCAAGTCTCAGTGTCGGAGCATGTCGGAGACGGTCAATGGAATGAGGAGTTGCTGTCAGCTGAACGGCTTGAGGCCCTGGTGGCGAACCTCGCACAGCACAGCCGGCCAACTCACCACTTTACCCATCATAAGGTGTCAGCTGGGAGGGccgatatagatagatatttagcTAATGTGATACTGGACACGCCCCCGAGACTATTAACTGGTCACCCATTAGATCCACAGCAGGATGCAATTGTGGTGGAAGTGCCCTCCTTACCACCATTGCCTCCTCTTCAGGAGATGAAGAGATGCCAAGAAGCGGATTGGTTCAACAAATCAAAGACTGCGGACAACACAATCCTCTCGGAACCTACGGACTTGGACCTTGGTGTCAGCGCCTCTCCAGCGCACAGCAAGCAACAGAACAAGAAGAGTCTTCCTCATAAGAAACGGATATCGCGGAAGCTTAAGAGGAATACTGGGAACACTACACCGCAACAGCAGGAGCTGGTAGTAATAAACTGTGGCGACGAGCCCCCCCAAGAGGAGATCCTGCCGGATTCGTTCGCGGCGGCGCCTCATCAGCctgcccacgcccacgcccatccccacgcccacgcccacggCCACGCCCACCCGGCGCTGCCGCCCGCGGAACACCATATCGCTCATGAGatgCGTCCGATGCTCATCTGCCAATTATGCGGTGAGTTCTACGGCGAGGAGCAATTAAAGTTCTACCACCACCTCAAGCAGCATTACGAGCCTCCGCCAACGATTATCATCGAGAATCCGGTTCCCGGACCGGAGTTGGCTATGGACAAGATGACAAACACATGCATAGTGGACAACGTGGCAACGCTCCCGGATTCCATAGTGGAATTGTCTCTGGAAGGCAACAAGACTATGTACCAGCAAATAGACAAGCATGTCTTGTATACCACCAGTGATAAGTCATTTTACTCGAGCAAGGTCCACTACACAATGTCCAGTATGGACAAGGCGGCCAGTCCGCCGCCCGAGGCCACCAAAGCCGAGATATATGACCAGTTGGAACTGTACAGCTGTAGCAAGTGCAATAAGTCCTTCAGGAAACAGAAGCATTGCGAAGATCACATCAAGGAGGCGCATTCTAATCCCAAACTGGAAGACATGGGCGAGTTCTCGGAGCCCGAGGACCTGATGGCCGGCATCCACGTGGCGGTCGAGGACGCCGAGCACTACGAGGCCACGTTGTTACCACACCTCACTGTCGACAACGGACATGTTCACCAGGATCACGTGGCCGACCATGCCCGCCATTGGTACCTCCGGGGCTCATCCCCCGCCCTGGGCCCGTGCCCGCCCGGCGCGGACGACGGCTACTGCCCAGTGTGCCCCGCCCCGGCCCCGGCCCCGCCGCCCCCCGGCCCCGCCCCGGCTACGGCCCGGCAGGACCGACAGGACAGGCCGGGACAGGGGCCGCTGGGAGAGACGCATCAGCttaaagCGGAGGTGCTGCAAAGGATCCTGGATGCGGAGGTGTCGGACGTGGGGTTCGCGGACCCCGCCGCCATGGACGGGCCCCCCCGTGCCCCGCACTCGCCCCCGCCAGCGCCCAAGGGGGGGGTAGCCGCGGGGGACAAGAAAAAGCACAAGCGCTTCGAGTGCCCGTCGTGCGCGCGCGTGTTCGTGCACCGCAACAGCCTGCTGTACCACGTGCTGTCGCACGCCGGGAAGCAGCACCCCTGCCGCGACTGCGGGAAGGGCTTCTACACGCAGGGCGCGCTCAAGATCCACAAGCGCGTGCACAACGGCGACCGGCCGTACAAGTGCGAGGACTGCGGCCGCCAGTTCCGGCAGTGGAGCGACCTCAAGTACCACCGCGTCTCGCTGCATTCCCTGGAGAAAAACTTCAAGTGTGAATTCTGTGACAAGGAGTTTGCGCGGAAGTACTCTCTGAACGTCCACCGAAGAATCCATACGGGAGAGAAGAATTATAAGTGCGACTATTGCAGCAAAACATTTAGGGCTTCCTCGTACCGGCTCAGTCATATGCGGACTCATACAGGCGACCGTCCATACAAATGCACGCAATGCGACAAATGCTTCCGCGTCGCGGGCGACCTGCGACGGCACACGCTCACCCACGACAAGGTACGCAACAGGTACGTCGAACACAGGAAACCCAAGGACGAAAAACCCAAGAAGACTAAAGACATCAAAACAGAAGTGGACGACTCACCGAAACTGAAGAAACTAGCTGCCAACATCACCAAAGCGGTGGACCAACTAGTGAACAATGAAAAGACTGGCAAACAGAAATCTAGGAGAATCAAAAAGGAAGGCGCTCCCAATATAACTATCACTAACAACAAAGACGCACAATTCAAAGTTAACACTGACTACGATAATGTCTACGATACGAGGCAAGTGGAGTATAGTAAATTTAAAGAAGTGTACACGGAGGGTGTAGGTTACAGCAAAGAAGATATAGATTATAAAGGGAAGGAGTACGAGGAACAAATGATTTACAAAGAGAGCGATCAAAGAATGAACGAGGAGCGGGAATTGGCAATGCTGAAGCCGATTTTCAGGAACAACGTTTGCAACGACGGTGAGAGACAGGTGGAATATAGGGCGGAAAATACTGACGGTAAAATGCAAATCTTCACTCACGTGGAGAAGAATTTCAGCTTAGTGCCTAATAGTGTGACTCTAGAAGATATTAGGCATATTGAAAGGGAACGAGAGCTACACGGGGAGCCGATAGAAACCGGATTCCTGGATAAACTCACGGCGTTCTACAATATACCGGCGGTATga
Protein Sequence
MRNVDSRLLMEKMDEVRQCNSAHQAGETVHVDANSLALNVDRVTVMHGQGYSSQMSRQVSVSEHVGDGQWNEELLSAERLEALVANLAQHSRPTHHFTHHKVSAGRADIDRYLANVILDTPPRLLTGHPLDPQQDAIVVEVPSLPPLPPLQEMKRCQEADWFNKSKTADNTILSEPTDLDLGVSASPAHSKQQNKKSLPHKKRISRKLKRNTGNTTPQQQELVVINCGDEPPQEEILPDSFAAAPHQPAHAHAHPHAHAHGHAHPALPPAEHHIAHEMRPMLICQLCGEFYGEEQLKFYHHLKQHYEPPPTIIIENPVPGPELAMDKMTNTCIVDNVATLPDSIVELSLEGNKTMYQQIDKHVLYTTSDKSFYSSKVHYTMSSMDKAASPPPEATKAEIYDQLELYSCSKCNKSFRKQKHCEDHIKEAHSNPKLEDMGEFSEPEDLMAGIHVAVEDAEHYEATLLPHLTVDNGHVHQDHVADHARHWYLRGSSPALGPCPPGADDGYCPVCPAPAPAPPPPGPAPATARQDRQDRPGQGPLGETHQLKAEVLQRILDAEVSDVGFADPAAMDGPPRAPHSPPPAPKGGVAAGDKKKHKRFECPSCARVFVHRNSLLYHVLSHAGKQHPCRDCGKGFYTQGALKIHKRVHNGDRPYKCEDCGRQFRQWSDLKYHRVSLHSLEKNFKCEFCDKEFARKYSLNVHRRIHTGEKNYKCDYCSKTFRASSYRLSHMRTHTGDRPYKCTQCDKCFRVAGDLRRHTLTHDKVRNRYVEHRKPKDEKPKKTKDIKTEVDDSPKLKKLAANITKAVDQLVNNEKTGKQKSRRIKKEGAPNITITNNKDAQFKVNTDYDNVYDTRQVEYSKFKEVYTEGVGYSKEDIDYKGKEYEEQMIYKESDQRMNEERELAMLKPIFRNNVCNDGERQVEYRAENTDGKMQIFTHVEKNFSLVPNSVTLEDIRHIERERELHGEPIETGFLDKLTAFYNIPAV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-