Blac030734.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990064.1:9107401-9110160[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00014 0.013 17.0 0.2 1 23 323 345 323 345 0.96 2 11 0.00078 0.071 14.6 3.2 2 23 431 453 427 453 0.91 3 11 0.00022 0.02 16.3 1.1 1 23 457 479 457 479 0.98 4 11 0.015 1.4 10.6 1.7 2 23 501 523 500 523 0.94 5 11 0.038 3.5 9.3 1.6 1 23 527 550 527 550 0.97 6 11 0.27 25 6.6 0.1 2 23 573 595 572 595 0.90 7 11 1.4e-05 0.0013 20.1 2.0 1 23 605 627 605 628 0.96 8 11 0.047 4.3 9.0 0.5 2 23 644 665 643 665 0.96 9 11 0.0034 0.31 12.6 0.3 1 23 671 693 671 693 0.95 10 11 0.24 22 6.8 3.1 1 22 699 720 699 723 0.91 11 11 0.002 0.18 13.3 0.1 3 23 780 800 779 800 0.98
Sequence Information
- Coding Sequence
- ATGGACGTACATAACAATATTGAGCGACTGAAATTAGCTATAAAAGAAGAACTAGATAATCATTTGCTTGAGAGCACTGAAGCCCTAAGTGAGATTAAAACAGAAACAATAGTGTCAACCCTGGAGAACCATGACACCGGTCCTGAGGCTAACAATCCATTTTCAAATGTGCAATTGGAAATAAAACAAGAAGTCAGTAACCATATGGATGTATACAATGACACCGTATCAGATAATCAAGTGTATAAAGACAATAtaattaaagaaattttaaacaatactGATTTTCATGGTAACCATGATGAATCGAGAAATGACAAGGAAATTGTTGTCAAGGAAGAAAaccaagaaattgaaattttaaacaatactGATTTTCATGGTAACCATGATGAATCGAAAAATGACAAGGATATGGTTGTCAAGGAAGAAAACCACGAAATTCCAGTATCATTTGACTATCCAAACTATGATTCTGTCAGCGTTAACAGTATTGCAAGCCTAAATAGTGTGAACAGTAACGAAGGTTGCAGTATTGACAGTTATGAAGCGCTGGCACTTGGCAATGTAGAAGCGTGCCTACAGGATGAACTCAACATCAAATTTGAGAATGACACTTATGATGATACAGAGAAAATGGAATACAAAACTGAGCCCGCAGATACAATAATGTGTAACGGTGTGCCTTCAACAGCTGATGGTCTTCCAAAAGATGTGGTAGTTAAACTGCCTGAGGACAAAATCAAGGAAGAGCAGATCCTACCAACATGTGAAGACAATGACAATAACTTTCAGCTGAACTCAATCACAGGAGACCTTCCATCATTTGCAGATACCAACGGTATGGATAGTGCTGACTCATTCCAGCTGAATTCCATTACTGGTAATGTGATGTCATTAGAACAAGAAGCATATAGTTTATTGAAAGAGAAGAAAAGGAAGGTGGTGACCTCTGATGAAGGTTACTTTGCTTGCCCCGATTGTCCCAAAATATACACAAATAAGAAAGGTATGTACCGCCATAGGGCCGTACATAAATGCATTGAGCGGCGTGCTAAAGGTGTAGCTAGAATGCTAAAAACGAGAAAAGAAAATCAGAAAAAGAGAGCCGGCGAGGTTAAGGCACTTAATGGAATAGACAATGTTAGCCAAAAGTTAGATAAAAATGAGCCACCAGCTCTTAAAAAGGAAGGCTATGAATGCACTTGTGGGGAAGTGTTTCAACGGCGCAGCAGAATGGAGACCTGCCTAAGATCGCATGATTTTTCTGAACAAGTCTTTCGCTGTGTGACCTGTGGTTCTTGCTCCAAATCTTTCAAAAGCAAGGAGGAGCTTGTATCGCATAGAAAGAGATTACATCGCAAAAGGTTCCCTTGTAAATTCTGTCCAACAGACTACGAAACCAGAAAAgaacttttcaaacatttacgAATACATCAAAAAGTGCAACTAATGGAATACAAAGTTATATCGGAGGTGGTTAAAGGCAAACAGAAGCTTAAATGTTTTATGTGCACAAAAATCTGTTCAGAACTATCAGATTTGAAATCTCATGTAATGAACGATCACAAAGAGCCTTATGCTTGTCCCCATTGTAAGAATACTTTTGGTAAAATAATAGATTTTGCTAACCATACTAAAACGTATCACCCTGAGGTTGAAGGTCAATCTGTTTTGTATGTTTTGGAAGCCTTCTCTAAGCTCGTCCAAGCATGGAAATGTCAGGAATGTGGCCAGCAATTTTTGGAAGCAGATAAGTTGGCTATGCATCAGATAGAGAATCATAGTCCTGAAGTGAAGGCGACATCTCAATTCCAATGTGAGGATTGCAGAAGGGTCTTCATCAGTCAGAAGGGTTTGATGTCCCATCGTCGCATACATCACAGTGTGGAAGCTCCAGAGGAATCTAAAGAGGTAGAACCTGGTGTTATGTGCTTGGAATGCCGTAAGATATGTGCAGATATGACAGCTTTGACGTCACATGTGAGATTGCATTCTCCAGACAGGAAGTATCCTTGTAAATTCTGCGATTACCGTTTCGCTACGCCCGAGAAGAGGAAGGCGCACGCGGACGTACACACGGGTGACATGAAATATGTGTGCTTCATATGCGAATACCAGTGCAGTTCTGAAAACAGGCTCAAGAAACATAAGATGTCTCTAAACCACGCCAATATGAGAGAGTACTTGCTTACTGGGAAACCGTTGATACAGGAGCCCCAGTCATCCAGTTCGAGAAAGAAGGAGAGCAGTTCCAAGaagagaaagaaagaagacagtgatgatgatgctgatgatgatgaagagtcgTCTTCCAGTTCGGAAAGTGAGGTGGCTTGTGATATTTGTGGGGAAAAGTTTCCCAGTGAGAAAGACATGTTGGACCATAAACAGACACATCCGTTCATTGAGTTCCCTAATGAAGACACACCGACTAGAATATTCTTTAAGTAG
- Protein Sequence
- MDVHNNIERLKLAIKEELDNHLLESTEALSEIKTETIVSTLENHDTGPEANNPFSNVQLEIKQEVSNHMDVYNDTVSDNQVYKDNIIKEILNNTDFHGNHDESRNDKEIVVKEENQEIEILNNTDFHGNHDESKNDKDMVVKEENHEIPVSFDYPNYDSVSVNSIASLNSVNSNEGCSIDSYEALALGNVEACLQDELNIKFENDTYDDTEKMEYKTEPADTIMCNGVPSTADGLPKDVVVKLPEDKIKEEQILPTCEDNDNNFQLNSITGDLPSFADTNGMDSADSFQLNSITGNVMSLEQEAYSLLKEKKRKVVTSDEGYFACPDCPKIYTNKKGMYRHRAVHKCIERRAKGVARMLKTRKENQKKRAGEVKALNGIDNVSQKLDKNEPPALKKEGYECTCGEVFQRRSRMETCLRSHDFSEQVFRCVTCGSCSKSFKSKEELVSHRKRLHRKRFPCKFCPTDYETRKELFKHLRIHQKVQLMEYKVISEVVKGKQKLKCFMCTKICSELSDLKSHVMNDHKEPYACPHCKNTFGKIIDFANHTKTYHPEVEGQSVLYVLEAFSKLVQAWKCQECGQQFLEADKLAMHQIENHSPEVKATSQFQCEDCRRVFISQKGLMSHRRIHHSVEAPEESKEVEPGVMCLECRKICADMTALTSHVRLHSPDRKYPCKFCDYRFATPEKRKAHADVHTGDMKYVCFICEYQCSSENRLKKHKMSLNHANMREYLLTGKPLIQEPQSSSSRKKESSSKKRKKEDSDDDADDDEESSSSSESEVACDICGEKFPSEKDMLDHKQTHPFIEFPNEDTPTRIFFK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00208228;
- 90% Identity
- iTF_00208228;
- 80% Identity
- -