Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: -
Assembly: GCA_905147135.1
Location: LR990065.1:14398633-14412333[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.62 57 5.5 2.5 1 23 426 448 426 448 0.95

2 10 2.7e-05 0.0024 19.2 1.7 1 23 455 478 455 478 0.97

3 10 2.3 2.1e+02 3.7 4.5 1 16 511 526 511 534 0.73

4 10 2.1 1.9e+02 3.9 0.9 3 23 539 560 538 560 0.95

5 10 0.00087 0.08 14.5 0.0 1 19 564 582 564 583 0.97

6 10 4.7e-05 0.0043 18.4 0.1 3 23 600 620 599 620 0.96

7 10 4.2e-06 0.00039 21.7 0.3 1 23 651 673 651 673 0.99

8 10 0.00024 0.022 16.2 5.5 1 23 679 701 679 701 0.98

9 10 7e-05 0.0064 17.9 2.3 1 23 707 730 707 730 0.94

10 10 0.00088 0.08 14.5 1.4 1 23 736 759 736 759 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.62	57	5.5	2.5	1	23	426	448	426	448	0.95
2	10	2.7e-05	0.0024	19.2	1.7	1	23	455	478	455	478	0.97
3	10	2.3	2.1e+02	3.7	4.5	1	16	511	526	511	534	0.73
4	10	2.1	1.9e+02	3.9	0.9	3	23	539	560	538	560	0.95
5	10	0.00087	0.08	14.5	0.0	1	19	564	582	564	583	0.97
6	10	4.7e-05	0.0043	18.4	0.1	3	23	600	620	599	620	0.96
7	10	4.2e-06	0.00039	21.7	0.3	1	23	651	673	651	673	0.99
8	10	0.00024	0.022	16.2	5.5	1	23	679	701	679	701	0.98
9	10	7e-05	0.0064	17.9	2.3	1	23	707	730	707	730	0.94
10	10	0.00088	0.08	14.5	1.4	1	23	736	759	736	759	0.96

Sequence Information

Coding Sequence: aTGCAGCAACCAGAGGAAGTACGCGCGTGTCGGGCGTGCTTGGCGACGGACTGCGAGCTACACGAGCTCAAGGAAAATGGTCTGGCGGAGAAGTTTCAGCAAGTGACAGCAATCCCGTTGAGGGCTGCTGCCCTGAACTCTATTCGCAatataaataaagcaaatataATGCCAATATTGAGTATTACTGAGGCATTGGTAGATTCATGTGGCGGAGAGAATGATTTAGATGATGTAACTGCTGTGGAAGATGATATAACAATGAAAGTAGAACCGGATGAGACAGATTATTTGCAAAACGTTGATGCCTATGCCGTTAAAGAACCTGATGAAGCTGTAGACAATAAATTATACAACAATGAAGAGATTTCAAAAGACGAGTATCACGAATTAAATGTACCGAACGAATCGGCCGCGGTTATTGATCCATTAatggtaataaaaaaagattgtAACATAATGGATGAATTTCTTGTATTTTCGCCTAAAGATAAGGACGAAGTTAACATTGTGGAATTCAATGACTCACATGAAGCAGTCAAAGAAAATACAATCCGTAAAACAGAAGTAGATCATGTTGTTGAGGAAGTTGTCGACGCCAATGCAATAAATGTTCACGAGGCACTCGAGTCGTTTAATGAAGAGACCATCTATTCTGAAGTAGACGATTTGGAAGAAATTGATGAGGACGTTAATGAACCTAGCGGAAGTAACATTAGTGATtctaacaaaagaaaaaaagcaACTATTTCAAAAAATAAGAAGACGATACCGCCCAAAAGACAATATTTGAGACTCGCTCCGCTGAAGGCGACGATTGTACAAGACAAGCTAAGAAAAATGGAAAGCAAAAAGAAATCATGTACCATAGTGAACAAGATCGCCTTTTACAGGCATATACTTGACAGATACTGTACGAAAgctaaaagaaataaagaagcAGACCGTTGGGATGTACGGAATGCAGTTCCGGATAATGTGGCGGGTAACGAATTGGCGAAGCGACTCGAGATTGCGAATAGCAGCGACGGTTACAGTATGCAGCTTTTCTATACGTTTCTGTTACGGAAATATGGACAGACagaaaatttaacaaatattacTAGATCATTTGGACTGAAACGGAATTTGTACACAGATACGGATGTCACTCCCGAAGTGGCAAAGGAGTTTGAGGAGAAATACCAGATGAAGATCAAAGTGTTCACTTCGAAAGAGGAGAAAATACGCTACTTCGAATCTCAGAAGCATAAAGACGCTTACCTCACCAGGAAATACAAGTGCGATATTTGCTACGTAGGTTTTCAGCAAAAGGAGCTTCATACGAGGCATAAGATGCTGCATGACCCTTCGGCTGGCCCATACGAATGCGAGGTGTGTCACAGACGCTCTAGCACTCGAAGCCTTTTGACGAAGCATATACTCCGTGTGCATAAGTTCCTGTACACCTGCATGGTGCCAGGGTGCGGTGATACCTTCCTAGTTAGcaATACAGCCAGGAGGCACTCCGAGCAGCACAAGGGAGAGGTCTACCCGTGCCGGCATTGCGGTAAAATATTCCAGAAATACAAGAGCCGCGTGTGCCACCAGCGCGCCCGCCACGGCTGGGAGCCGTGCGCGCTCTGCCACTGCCGCGTGGCGGGCGCCGCCGCGCTCACGCTGCATCGGAAGCGGCAGCATCCGGAGGTGTTCCCTTGCCCGGGCTGCGGCACCGAGTTCGCGTCCGCCACCGCGCTGCACCGCCACGGCCCGCggtgcggcgccggcgccggcgcgggggcgggggcgggggcggcgtgcGGGGCGTGCGGGGAGACCTATCGCACCCAGGAGGAGTTGCAACGACATATAGAGACACACAACATGAGCAAGAGGGGGACCAAGTTGTTTAATAAGCGTCAAAAATGGCGAGCAAGGACCGACGGAGAGAGCTCAACAATTACAAAGCCTTATCAGTGCGAGATATGCTCCAAAATGTTTGCTGTGCTGAACTACCTCCGGGAGCACATGAGGGTCCACACCGGGGAGAAGCCCTACGAGTGCGACCACTGCCACAAGCGGTTCCGGGTCAAACTGTGTTTGCAGGCCCACATGGCGGTGCACAGTCCGTCGCGGCCGCACGACTGCAAGGCCTGCGGGAAGGCGTTCAAGATGCTGGGGCACTTGAAGCGGCATCAACGGGCGGTGCATGGAGGCGAGCGGCCGTTCGTGTGCGACGTGTGCGGGAAGGCCTGCCAGACCAAGATCGGGCTCCAGAATCACGTCAAGCACGTGCACATGAACGAGCCCTGGCCCAAGCGGGTTAGGGTTAAGAGAAAGGAAAGAAAATAA
Protein Sequence: MQQPEEVRACRACLATDCELHELKENGLAEKFQQVTAIPLRAAALNSIRNINKANIMPILSITEALVDSCGGENDLDDVTAVEDDITMKVEPDETDYLQNVDAYAVKEPDEAVDNKLYNNEEISKDEYHELNVPNESAAVIDPLMVIKKDCNIMDEFLVFSPKDKDEVNIVEFNDSHEAVKENTIRKTEVDHVVEEVVDANAINVHEALESFNEETIYSEVDDLEEIDEDVNEPSGSNISDSNKRKKATISKNKKTIPPKRQYLRLAPLKATIVQDKLRKMESKKKSCTIVNKIAFYRHILDRYCTKAKRNKEADRWDVRNAVPDNVAGNELAKRLEIANSSDGYSMQLFYTFLLRKYGQTENLTNITRSFGLKRNLYTDTDVTPEVAKEFEEKYQMKIKVFTSKEEKIRYFESQKHKDAYLTRKYKCDICYVGFQQKELHTRHKMLHDPSAGPYECEVCHRRSSTRSLLTKHILRVHKFLYTCMVPGCGDTFLVSNTARRHSEQHKGEVYPCRHCGKIFQKYKSRVCHQRARHGWEPCALCHCRVAGAAALTLHRKRQHPEVFPCPGCGTEFASATALHRHGPRCGAGAGAGAGAGAACGACGETYRTQEELQRHIETHNMSKRGTKLFNKRQKWRARTDGESSTITKPYQCEICSKMFAVLNYLREHMRVHTGEKPYECDHCHKRFRVKLCLQAHMAVHSPSRPHDCKACGKAFKMLGHLKRHQRAVHGGERPFVCDVCGKACQTKIGLQNHVKHVHMNEPWPKRVRVKRKERK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -