Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: -
Assembly: GCA_905147135.1
Location: LR990067.1:1068279-1077798[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2 1.1e+02 4.6 2.1 3 23 249 270 247 270 0.95

2 14 0.015 1.4 10.6 0.3 1 23 276 298 276 298 0.99

3 14 0.032 2.9 9.5 2.8 2 23 305 326 304 326 0.96

4 14 0.91 83 5.0 0.0 3 21 334 352 333 353 0.93

5 14 0.036 3.3 9.4 0.0 2 23 374 396 373 396 0.95

6 14 5.5 5e+02 2.5 0.1 2 23 403 424 402 424 0.87

7 14 0.00034 0.031 15.7 5.6 1 23 430 452 430 452 0.98

8 14 0.0059 0.54 11.9 0.1 3 21 460 478 459 479 0.92

9 14 0.0001 0.0091 17.4 2.0 2 23 505 526 504 526 0.97

10 14 1.4e-05 0.0013 20.1 0.1 1 23 534 556 534 556 0.98

11 14 1.2e-05 0.0011 20.3 3.2 2 23 562 583 561 583 0.97

12 14 0.0073 0.67 11.6 3.5 1 23 589 611 589 611 0.97

13 14 1.4 1.3e+02 4.4 8.0 1 23 617 639 617 639 0.97

14 14 0.00012 0.011 17.2 3.6 1 23 645 668 645 668 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2	1.1e+02	4.6	2.1	3	23	249	270	247	270	0.95
2	14	0.015	1.4	10.6	0.3	1	23	276	298	276	298	0.99
3	14	0.032	2.9	9.5	2.8	2	23	305	326	304	326	0.96
4	14	0.91	83	5.0	0.0	3	21	334	352	333	353	0.93
5	14	0.036	3.3	9.4	0.0	2	23	374	396	373	396	0.95
6	14	5.5	5e+02	2.5	0.1	2	23	403	424	402	424	0.87
7	14	0.00034	0.031	15.7	5.6	1	23	430	452	430	452	0.98
8	14	0.0059	0.54	11.9	0.1	3	21	460	478	459	479	0.92
9	14	0.0001	0.0091	17.4	2.0	2	23	505	526	504	526	0.97
10	14	1.4e-05	0.0013	20.1	0.1	1	23	534	556	534	556	0.98
11	14	1.2e-05	0.0011	20.3	3.2	2	23	562	583	561	583	0.97
12	14	0.0073	0.67	11.6	3.5	1	23	589	611	589	611	0.97
13	14	1.4	1.3e+02	4.4	8.0	1	23	617	639	617	639	0.97
14	14	0.00012	0.011	17.2	3.6	1	23	645	668	645	668	0.97

Sequence Information

Coding Sequence: atgggAGACCCTTTGGAAAACACGAGCTCTGTAGCATCAACGCATTGCCGCTTTTGCGGCCTAAAGAAGAGTTACTTAGAAATATTGGATTTGTTATGCGACTTGGAAACACTTGAAGATTATAGAAAAATCGTTGACTATCTAGAATTGGATTTCCTAGACTTATCCGATGCCAATACCCTACCAAAAACAACTTGCGAACAGTGCTATGATGTTTTTCAAGAAACTTtcaagttttttaaaaacttaaatcCTGATTCTGAaccaataattacaaaaatgtttaaCATAAAAAGAGAACCTCCAGAGAAGAATTTCGTCGTAAATACCAATCCACAAAATACAACGACTATCATTGATACTAATAAACACAACAGTGGTACAGTATCTGAGACAAACACAAGCTGGCATACTATATGCCCATTTTGTCATAAAAACGACACAAACAGCTTATTATCCGATGACTCTCCAGCTAAGGAATATCAGAAAATAGAGAACTTTTTCATTCGCATCATCACTAAACACGACCATACCACTACGGTCAGCAATTCCTGCATCAACTGTTTCGAAACTCTACGCAATTCGTACAACTTCTTGAAAACTGTTAAGCACGTCCAGGAAAGTTTAATCAGAGGGTACAATGTTAAAACTGAGTCGTTGCATAAAATAGCcgctgtaaatattaaaatggaaTCAACTAGAGATTGTGGTAATGGTGAATCTTGGAATAATTATCAGTACGGTTGTTGTTACTGCCCATATAACGGCAAAACTATGGAAGAATTGAGATCCCACAGCAAGAAGACGCATAATAAATGTTACGCATTCAAATGTGCTGATTGCAGTGAGCGGGTTAACAATTTTGGAGAGTTTGTGGACCATGTACGCAAGCACAGAAGCAGTTTAAACATCTACTGCCAATATTGCAACCAGCGATTCCCCTCGCCATCCGAGTGCGAGAGCCACGTCCACACCCACTACATTGGGCTCTCCAAGATCTGTGGACTGTGTGGCGAGGTCCTACCCTACGCCAACACCCTGGCCTGGCATACGAAGCTTTATGCTGAGGTGGAGGAAGTGAGCAGTAATAGCGGAGGATCATGGGACGACTACGAGTGGTCTTGTCAGGAGTGCCCAACCAGGGTCGCTACCATCGCAGAACTACGGATACACACGCAACGCGCCCACGGGAAGGGATTCGCTATCAAATGCGCGGATTGCGACGAAAAGATGGCCGACTACAAGAAGTTTGTTGTGCATGTGGTCTTGCATAGGCCGTATTTGAAATACTACTGCCAGTATTGCAACACCCACTTCTCCAAAGTGAGCGAGCTGAACCACCATATACTCAGACACATCACCAGCCAGCAGCGGCCTTGCACGGTGTGCGGACAGCGGTTCAGGAATAACCTGGAACTGGCTGATCATAAGAACTTGTATTGCAGGACTGGACAGAAGGAAGTTAAGCTCCACCCCACCAGGCGAAGAAGAGAGCTCACAACCGAAGATTTGACCTGCAAAATGTGCTTAAAACGATTCGACACGACCACCCAACTGAGACGCCATATTGAAACCCACAATCCCATGAGGAGACGCGACTACGTCTGTCAAATGTGCGAGAAAGCATTCATGACACCAGCGGCTCTAAGAAACCACATAAAACTCCATGGAACGAAAACAATCACATGCGAAATATGCAACAAGAAGTTCCATACGAAACGTCAACTGAAAAACCATATTATAACACACTCGGACGCGAAACCATTCGTCTGCGACGAGTGCGGTAATAGTTTTCGAACGAAAAAGCGTCTCAAATGCCATCTTTTGAGCCATTCAACTATCAAACCTTATAAATGCATGTATTGCTACAAGGAATTCAAATTCGTGCAGTGTTTCAAAACACACCAATACCAGCACACTGGAGAAAGGCCGTATTCCTGCGAATTGTGCGATCGTACTTTCACAAATTGGACGAATTGTAACAAACATATGATTAGAAAGCATGGGATTACGTTGGCAAAGACTAAAATCACTCCTAGAGGAAGGGTTTCTATTAATAGGAAGACGGGGGAAGCTAAGGAGTTGGCTTCGGATAGTAATGCGAAGGAGTGGTTGAGTAAGATGCTGTTGCCAGAAAGGAGGGGTAAGAAGCCGGGTGTCGCTGCCATTTTAAACCCTAACTCCTAA
Protein Sequence: MGDPLENTSSVASTHCRFCGLKKSYLEILDLLCDLETLEDYRKIVDYLELDFLDLSDANTLPKTTCEQCYDVFQETFKFFKNLNPDSEPIITKMFNIKREPPEKNFVVNTNPQNTTTIIDTNKHNSGTVSETNTSWHTICPFCHKNDTNSLLSDDSPAKEYQKIENFFIRIITKHDHTTTVSNSCINCFETLRNSYNFLKTVKHVQESLIRGYNVKTESLHKIAAVNIKMESTRDCGNGESWNNYQYGCCYCPYNGKTMEELRSHSKKTHNKCYAFKCADCSERVNNFGEFVDHVRKHRSSLNIYCQYCNQRFPSPSECESHVHTHYIGLSKICGLCGEVLPYANTLAWHTKLYAEVEEVSSNSGGSWDDYEWSCQECPTRVATIAELRIHTQRAHGKGFAIKCADCDEKMADYKKFVVHVVLHRPYLKYYCQYCNTHFSKVSELNHHILRHITSQQRPCTVCGQRFRNNLELADHKNLYCRTGQKEVKLHPTRRRRELTTEDLTCKMCLKRFDTTTQLRRHIETHNPMRRRDYVCQMCEKAFMTPAALRNHIKLHGTKTITCEICNKKFHTKRQLKNHIITHSDAKPFVCDECGNSFRTKKRLKCHLLSHSTIKPYKCMYCYKEFKFVQCFKTHQYQHTGERPYSCELCDRTFTNWTNCNKHMIRKHGITLAKTKITPRGRVSINRKTGEAKELASDSNAKEWLSKMLLPERRGKKPGVAAILNPNS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00208210;
90% Identity: iTF_00208210;
80% Identity: -