Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: -
Assembly: GCA_905147135.1
Location: LR990046.1:1223302-1232654[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.091 8.3 8.1 1.4 1 23 255 278 255 278 0.97

2 10 0.00049 0.045 15.3 2.2 1 23 285 307 285 307 0.97

3 10 0.002 0.19 13.3 0.7 1 23 337 360 337 360 0.95

4 10 1.8e-06 0.00016 23.0 5.3 2 23 364 385 363 386 0.95

5 10 0.16 14 7.4 0.3 2 23 390 412 389 412 0.90

6 10 0.0017 0.16 13.5 2.1 2 23 424 446 423 446 0.96

7 10 0.00019 0.018 16.5 0.3 2 23 455 477 454 477 0.94

8 10 0.00027 0.025 16.1 1.8 1 23 483 506 483 506 0.95

9 10 0.0025 0.23 13.0 3.8 1 23 515 537 515 537 0.97

10 10 0.00037 0.034 15.6 1.7 1 23 543 566 543 566 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.091	8.3	8.1	1.4	1	23	255	278	255	278	0.97
2	10	0.00049	0.045	15.3	2.2	1	23	285	307	285	307	0.97
3	10	0.002	0.19	13.3	0.7	1	23	337	360	337	360	0.95
4	10	1.8e-06	0.00016	23.0	5.3	2	23	364	385	363	386	0.95
5	10	0.16	14	7.4	0.3	2	23	390	412	389	412	0.90
6	10	0.0017	0.16	13.5	2.1	2	23	424	446	423	446	0.96
7	10	0.00019	0.018	16.5	0.3	2	23	455	477	454	477	0.94
8	10	0.00027	0.025	16.1	1.8	1	23	483	506	483	506	0.95
9	10	0.0025	0.23	13.0	3.8	1	23	515	537	515	537	0.97
10	10	0.00037	0.034	15.6	1.7	1	23	543	566	543	566	0.97

Sequence Information

Coding Sequence: ATGGACGTAGCGACATACAAATGGAAAACAGACGCTGGATTATGTCATGGCTGTTTGAGCACGGACCGGGGCAAACCAGAACTCATTGAAGATGGTGACCTCTTTCACTATTTATTGGAACAATATTCAGACGTTAAAGATACGTCAGACACAATAATGTTGTGTTGGGAGTGCAAGGCGGTCCTACGCAAAGTGAAACAATTTCAGCATCGTATTAAGAAAGCACAAATTATATTACAACAGTCAAGGCACCAGTTGGAATCCCTGCCCCTTACAACTCTCCGTGCTGTGAATTTAAAAGAGGCACCCATATTGATATATGAAGATATAATAGTAACTAATACAGAACCAATAGAACATAATCCAAACAACAACCATATAGTACCCGATCAACCAGTTAATCAATTAGAAGATATACAGAATATGATAAAAGTGAAAGAAGAAATAGATTCTGCAGTTTACACCAGTTTTGATTTTGAGGATGCCAAGGAGGAATACGATGAGAATGATTCAAAACAAGAGTTGGATGTAAAAAAAGAAGAGGAAGATGTAAAAGTCAATAGTAAAGATGTATTAAAAGCTAAAACCATTAAAACTGAACCAATGAAGGGGAAATCTATTTACAGGCATATGAaagtgattaaaaatattataaatatgaacgATGAAAACGTTGATAAATATATTGAAGAAGTATTTCTGACAAACGAAGAAATGGATGAGTTGGCACGGAGGGACTACGAGAAAAATCGAAGGCGCGCCTATAGATGCAAGCCTTGCAACCGTTATTTCAGAATAGCAATTGAATTTAATCGGCATAAAATGATGAATCATTTAAAAGACAGGCCCCCACACCGTTGTGAAGAGTGCGGTCACAGTTGCCAATCCGCCGAGGAGTTGAACGCACATTGGCGCGGTCACAATACGGCGTGGCGGTGCGTGCGCTGCGGCGAAACGCACAGACTAGCGACTGAGGCCATGCGGCACGTGTATACCCATATGGAAAGCTACGTGTGCAGGGAGTGCGGAGGGCGGTTCTACGTCCAAAAGAATTTCCGTGAACATTATAAGGCGATACATAAAATTTCTACATGCCACGATTGCGGGAAAAGTTACAAGTCGAAATACGCTCTCAGGAAGCACATCAGCCGCCACCACTTGCCAAGCAAATGTGAGCCCTGCGGCATGACATTTATGAGCTACATGAACTATTATCGCCACAGAATCGCTTGGCACCCAGACAGAGCTAAACAGAACCTGGAATCGTCGTACTGTGTGGAATGTGACAAACAGTTCGTTAGCTTGCATAAGTACAAGACCCATTTGAAGAGTGCACACACAACAAAGAGGAAAGAGCGAGTTCCTTGCCCCGAATGTGGAAAGATATTCTCCAGGACGAACTTCATGAGGAACCATTACAACCTACAGCATCTGAAGAAGTCGAAACACCGGTGTCAGATTTGTCACAAGTCCCTCACTACGGCTGCGAGTCTTCGATTGCACACAGCGATGGTTCACGAGCGACGGCCGAAACAGCGAACGCATATATGTGATATTTGCGGGCGGGGATTCCACACGAGGCGAATACTGACCAACCACCGTCGCACGCACACCGGAGAGAGGCCCCATGTTTGCGAGCACTGCGGCCGCGGGTTCGCGCAGGTGACTGCGATGAAAACGCATGTGAAAACGCAGCATAGGGACCAAGCTAACGCTCCTATtgaacaatga
Protein Sequence: MDVATYKWKTDAGLCHGCLSTDRGKPELIEDGDLFHYLLEQYSDVKDTSDTIMLCWECKAVLRKVKQFQHRIKKAQIILQQSRHQLESLPLTTLRAVNLKEAPILIYEDIIVTNTEPIEHNPNNNHIVPDQPVNQLEDIQNMIKVKEEIDSAVYTSFDFEDAKEEYDENDSKQELDVKKEEEDVKVNSKDVLKAKTIKTEPMKGKSIYRHMKVIKNIINMNDENVDKYIEEVFLTNEEMDELARRDYEKNRRRAYRCKPCNRYFRIAIEFNRHKMMNHLKDRPPHRCEECGHSCQSAEELNAHWRGHNTAWRCVRCGETHRLATEAMRHVYTHMESYVCRECGGRFYVQKNFREHYKAIHKISTCHDCGKSYKSKYALRKHISRHHLPSKCEPCGMTFMSYMNYYRHRIAWHPDRAKQNLESSYCVECDKQFVSLHKYKTHLKSAHTTKRKERVPCPECGKIFSRTNFMRNHYNLQHLKKSKHRCQICHKSLTTAASLRLHTAMVHERRPKQRTHICDICGRGFHTRRILTNHRRTHTGERPHVCEHCGRGFAQVTAMKTHVKTQHRDQANAPIEQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00208257;
90% Identity: iTF_00208257;
80% Identity: -