Blac031105.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990065.1:537895-551040[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.005 0.46 12.1 1.3 1 23 225 247 225 247 0.98 2 11 0.00085 0.078 14.5 3.1 1 23 254 276 254 276 0.97 3 11 0.62 56 5.5 0.0 1 23 280 304 280 304 0.91 4 11 0.77 70 5.2 10.2 1 23 309 331 309 332 0.96 5 11 0.17 16 7.2 0.7 3 23 337 358 336 358 0.95 6 11 0.00065 0.059 14.9 0.1 1 19 362 380 362 383 0.95 7 11 0.072 6.5 8.4 0.0 3 23 420 441 419 441 0.92 8 11 0.00032 0.029 15.8 0.1 1 23 501 523 501 523 0.98 9 11 5e-06 0.00046 21.5 0.9 3 23 531 551 530 551 0.98 10 11 3.4e-06 0.00031 22.0 1.3 1 23 557 580 557 580 0.97 11 11 0.00014 0.012 17.0 0.7 3 23 588 609 586 609 0.97
Sequence Information
- Coding Sequence
- ATGTACCAGTACGAATACCAGTTTGATGATGACGCACATATGAAAGTAGAATATTTGGAAGAAATTCACGAAGACGTCAGTGAACCAAAAAAGAATACTAAGACTAGGCAATCGAGTAAAAGCAAAGAAACAACTATAGCAAAAAGCAAGACAACCAAACTGTCCAGCGGTCTTTTACGTCAAATACCGCTGACGACCTTACAAGACATGATAACGAAACTGGAAGGCAAAAAGAAAACGTCTGCCATCgtaagcaaaatatttttttacaatcatATTGTTGACAAATACCATAAGAAAACTACAACAAATGAGGAAGCAGACCTTTGGGATGCAGACGATGTAATTCCAGACAATGTGGAGGAACAGGAATTAGAAAGGCAGCACGAGATTGCAAATGAGAGCACCAGTATCAGCGTACAGCTCTTCTATTcgttttttaaagaaaagtaCAGACGAGCAGAAGCTACAACAGATCAGAgtgaaacaacaaaaaatagcAAATCCAAAACTATGAAACTGGACTTGTACGCAGATAAAGATGTCAGTTCTAAAGTGGCGCAAGAGTTTGAGCAGAAATACCAGATGAAGCTAGAGGTGTTCGCTTCTAAAGAGGACAAACTACGTTTCTTCGAATCTCTAAAGCACAAAGTTCACTACCTTAAAATGGAATACAAATGTGAAATATGCTACGTGGGCTATCAGCGAAAGGATCTTTATACAAGGCATAAGATGCTGCATGATCCTTCGGGCGGCGCTCACGAGTGCGAGATATGTCACAGACGCTACGACTCCCGAAGCGTTTTGACGCAACATTTACTATCGCATAAGTTCCAGTACACATGTTTAGTGCCGAAATGCGGCGCTACCTTCCCTGCTAGCGTCGAAGCCAAGCGCCACTCTGACAGCCACAAGGGAATGGTGTATCCCTGCCGACATTGCGACAAAATATTCCAGAAACACAAGTCGCGTACGGAACACCATCGCATCCACCACGGCAGCAACGCATGTCCGCTCTGCCACCGCGCCGTGACGGGAACGAAAGCGTTGACTCTGCACCGCACCAAGATGCATCCTGTGGTGTACCCTTGCTCGGGCTGCGGCGCGGAGTTCGCTTCCCTTTCCGCGCTGAACCGCCACAGCAGCCACTGCGGTGAAGGGGGCAAGGAAGGGGAGGGGGCGGCGGGGTGTTTGGAGGGGGAAAAGAGGGATGTGGAGGGGTCCGAGGGGGGTGTGAAGGGGGGTGCAAAAGCGGCATGCGGCGCGTGCGGAGAGACCGTAGCCACCGAGGAGGAGTTGCAACAACACATAGAAGAGGCTCATAAAGTGGGCAAGAAAGGAACGAAGGTACTACATCCAGACAGGTCCTTACGAGCGAACAAGCCCAAGCCGCGACAACCATGCCTCCACGACACAGCAGAGGCCGAGGGCCGCCCGCGACGCTCGAAGACCGACGCCGTGGAGATATGCTCCCCCCACTGCAAATACAAGTACCATCACTTCATGTGCGATGTGTGCTCCAAAATATTTTCGGCCCCGGTGTTCCTCCGCGAGCATATGCTCGTCCACACCGGAGAGAAGCCCCACGGCTGCCGCGACTGCCCTAAGCGGTTCCGGACCAAATTCCAGCTGCAGAACCATATGGCGGTACACAGCGACGCGCGGCCATACACCTGTGACCAATGCGGCAAAGCCTTCAAATCGATCACCAACTTCAAGCGACACGAACGCAACGTGCACATAGGCTCGCGGCCCTTCGGCTGCGACATTTGCGGCAAAGCCTATCAGAGCAAGCATGACGTACGTACGCACATCAAAACCGCCCATATGAACCAGCCTTGGCCCAAGCGGGTTAGGATACCGAGAAAAAAGACCAAAGAATGA
- Protein Sequence
- MYQYEYQFDDDAHMKVEYLEEIHEDVSEPKKNTKTRQSSKSKETTIAKSKTTKLSSGLLRQIPLTTLQDMITKLEGKKKTSAIVSKIFFYNHIVDKYHKKTTTNEEADLWDADDVIPDNVEEQELERQHEIANESTSISVQLFYSFFKEKYRRAEATTDQSETTKNSKSKTMKLDLYADKDVSSKVAQEFEQKYQMKLEVFASKEDKLRFFESLKHKVHYLKMEYKCEICYVGYQRKDLYTRHKMLHDPSGGAHECEICHRRYDSRSVLTQHLLSHKFQYTCLVPKCGATFPASVEAKRHSDSHKGMVYPCRHCDKIFQKHKSRTEHHRIHHGSNACPLCHRAVTGTKALTLHRTKMHPVVYPCSGCGAEFASLSALNRHSSHCGEGGKEGEGAAGCLEGEKRDVEGSEGGVKGGAKAACGACGETVATEEELQQHIEEAHKVGKKGTKVLHPDRSLRANKPKPRQPCLHDTAEAEGRPRRSKTDAVEICSPHCKYKYHHFMCDVCSKIFSAPVFLREHMLVHTGEKPHGCRDCPKRFRTKFQLQNHMAVHSDARPYTCDQCGKAFKSITNFKRHERNVHIGSRPFGCDICGKAYQSKHDVRTHIKTAHMNQPWPKRVRIPRKKTKE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -