Blac031409.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990065.1:4602831-4624054[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.1 9.3 8.0 0.3 1 23 254 277 254 277 0.95 2 12 0.0015 0.13 13.8 0.4 2 23 286 307 285 307 0.95 3 12 1.2 1.1e+02 4.6 0.2 1 23 311 333 311 333 0.96 4 12 0.00031 0.028 15.9 0.6 1 20 339 358 339 360 0.94 5 12 0.0055 0.51 11.9 1.0 2 21 367 386 367 387 0.92 6 12 8.7e-05 0.0079 17.6 0.5 2 23 403 424 402 424 0.94 7 12 0.00016 0.014 16.8 0.3 1 23 429 451 429 451 0.98 8 12 6.6e-05 0.006 18.0 5.1 1 21 460 480 460 485 0.94 9 12 0.00041 0.038 15.5 1.8 1 23 493 516 493 516 0.92 10 12 0.0033 0.3 12.6 0.3 1 23 522 545 522 545 0.96 11 12 0.038 3.5 9.3 0.4 3 19 559 575 557 576 0.89 12 12 0.045 4.1 9.1 0.9 1 23 589 612 589 612 0.96
Sequence Information
- Coding Sequence
- ATGAgagaaataaacattaatattgaGGGTTATAATGTGAATGGAATTTGTGTGGGATGTTTAAACTACAATCGTAAGATGTTTTACTCCGATGAAGTGAAGGAGTGTTTACGATATTTAGCCAATATCGATGTGCCCGATGGCCTGACAGTCCAGGTCTGCTGGGAGTGCTTGGCATCAGTCAGAGCAGCCAACCGTTTTCAAATGCAGGTGCTGCACTGTTATGATGTCCTCATCGACTATTCCAATAAGCATACATTCCTTAATTCACCGGAAGACCTGTCAATGTATTCATaccagagactatcgagtatgGTAACAGAGGAACCGCCTGCTTACATCCAGTATCAGGACAATATCAAGGCAGAAGATGAGGAAATCAAGACTGAAATAAACAATATTGCGGATGAAGCAGATTTACATCCATTAAAAGAAGAGACTGAAGAAGATTATACACAGGACACTCAGTATTCAGACGACTTCAAGGACAATGCAGATGTAACGTCCGATGATGATATACAGCTGTCTACTCTAAGACAGAAAAAGGAGAAGaaagagaagaaaaagaaaaaagttaagGAGAAAAGTGCAAAAACCAGAATCAAGGCGAAAGAGAAGAGTGGTGAACCGCACAATCATGTAAATAGAAAGCTGAAGAATCTACCCACGGAACTCATTGAGTTATACACTATGGATGAAGACGAAATGTGGCAGATTCGCAGCGAAGACGTAGCCAGCAAGGAGTTTGAAAAGCTAAAATACAGATGCTCCGACTGCATAATTGGTTTCAATACGGAGAAACTAATGAACGACCACATGAGCGGGAAACATAGACCGAAAAGCCAAGACTGCCAGCAATGTGACGTGTGCAAAGCGTACTTCATCACCAAGGACAACCTCTCCACGCACCGAGCTCTCCACTTAACCGCGTACCGGTGTCTGCAATGCGACGTCCGGACCACCCTGAAGGCGGTGGCAGAGAAACACGCGAACACACACAGCGACTCGAAAGGGTACAGCTGTAGTAGTTGTGGGAAGGTTTTTGGaACGAAGTCCAAACTGTCGTACCATCGCAGCGTTTGCCGCCAGGAGAAGCCTCAGTGCGACTGCTGCGGAAAAGTATTCGCCAACAAGATGACACTGAAATATCATCTCAAGATCCTGCCCCAGAACAAAGAAGAGAAGCCCACGGAAAAGCTGTTCATCCCTTGCAAGGGCTGCGGGAAGGTGTTCCACTCGAAGAAGAGCTACAGGGCGCATGTTGTGATCCACGACGGGCTCTCGTACCCGTGTCCGATTTGCGGGAAGCTGTTCCAGTGGAAACGGAACCTCGCCAGGCACACACGGAACCACAGGGACCGCGACGCGGGCGCCCGCCACGAGTGTCGGGACTGTGGGAAAACGTTCTCGAGCCGCGACTGCTACAACAACCACATGCGGCTGAGCAAACGACACGTGCCCGAGGACGCTTATGGcCACGAATGCAACTACTGCGGCAAAAAGTTCGCGACAAAATGGTGCATGGTCGACCATATCGACTGGGACCACTTGAAGCGGGTGAAGTACCAGTGCAGCGTCTGTTTCAAGCCATTCAAGACGGCCAAGATAATGGTGGCCCATATGAACAACATACACGAAGGCAAGAAGAACAGAGAACCGGACGGGGAGCACCTCTGCGAAGTGTGCGGGAAGTCGTACAAGACAGTGAAACGCCTAAAAGGCCACGTGTGGGCAATGCACACGAATCGATCGACCACGAAGAGTTTCAAATGCAAGCTCTGCCCGGCCACATTCACGTGGCAGACCTCCATCTACAAACATGTCAAGATGATGCATGACACCGGCAAGAGAGCTACTaaaCAACCCCGAATAACGTCATTGGCGAAGAAGCCGGACCCGTACCCAGAGGCGGACTTATCCCGGGTCCAGTACTTTCACGACCCAGCCTTGCATGGGCCGCTCGCACCGTACGCTACGCACGGAACTGAGGGCTAG
- Protein Sequence
- MREININIEGYNVNGICVGCLNYNRKMFYSDEVKECLRYLANIDVPDGLTVQVCWECLASVRAANRFQMQVLHCYDVLIDYSNKHTFLNSPEDLSMYSYQRLSSMVTEEPPAYIQYQDNIKAEDEEIKTEINNIADEADLHPLKEETEEDYTQDTQYSDDFKDNADVTSDDDIQLSTLRQKKEKKEKKKKKVKEKSAKTRIKAKEKSGEPHNHVNRKLKNLPTELIELYTMDEDEMWQIRSEDVASKEFEKLKYRCSDCIIGFNTEKLMNDHMSGKHRPKSQDCQQCDVCKAYFITKDNLSTHRALHLTAYRCLQCDVRTTLKAVAEKHANTHSDSKGYSCSSCGKVFGTKSKLSYHRSVCRQEKPQCDCCGKVFANKMTLKYHLKILPQNKEEKPTEKLFIPCKGCGKVFHSKKSYRAHVVIHDGLSYPCPICGKLFQWKRNLARHTRNHRDRDAGARHECRDCGKTFSSRDCYNNHMRLSKRHVPEDAYGHECNYCGKKFATKWCMVDHIDWDHLKRVKYQCSVCFKPFKTAKIMVAHMNNIHEGKKNREPDGEHLCEVCGKSYKTVKRLKGHVWAMHTNRSTTKSFKCKLCPATFTWQTSIYKHVKMMHDTGKRATKQPRITSLAKKPDPYPEADLSRVQYFHDPALHGPLAPYATHGTEG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00208200;
- 90% Identity
- iTF_00208200;
- 80% Identity
- -