Blac032091.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- ZIPIC
- Assembly
- GCA_905147135.1
- Location
- LR990065.1:13990043-14009912[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0026 0.24 13.0 1.9 1 23 256 278 256 278 0.98 2 11 0.028 2.6 9.7 3.1 1 23 312 334 312 334 0.98 3 11 0.084 7.7 8.2 1.4 1 23 339 362 339 362 0.92 4 11 0.011 0.99 11.0 0.5 1 23 366 389 366 389 0.94 5 11 0.14 13 7.5 0.0 1 20 396 415 396 417 0.95 6 11 0.24 22 6.8 0.0 3 23 426 446 426 446 0.96 7 11 0.0006 0.055 15.0 0.4 2 23 454 476 453 476 0.96 8 11 5.5e-05 0.005 18.2 0.5 2 23 493 514 492 514 0.96 9 11 0.00011 0.01 17.3 0.3 1 23 521 543 521 543 0.97 10 11 7.9e-06 0.00072 20.9 0.4 1 23 549 571 549 571 0.94 11 11 2.3e-06 0.00021 22.6 1.4 1 23 577 600 577 600 0.97
Sequence Information
- Coding Sequence
- ATGGGAGATATATTGGCGTGTCGTGTTTGCCTTATTACAGACGTAAAATTGTTTAACATGTACAACTACGACTTGATAACCACATACGAAAATGTTATTGGGACTcagATGTCGGAAGGTCTGCCGCATCAGCTGTGCAGCATCTGTCGTTCGCTCCTAGTCAAGTTCGCCACATTCCAggaaaaatgttataatacaCAACACATTTTAAATATAGCTGTTTTAGAGCAAGTAAAGCTCACAACAACTTATGTAAAGAGTATAGATAGGGTACTATACAAATTAGAGTCACCTTACAGTATTAGTAAACCAGAACTATTAAGTATTGACAGCGATTCGGAAAACACAGAGTATGAGATTAAACCTGAAGCTGATACATTTTTGGAAAACGAAGAAAATGATAAGAGTAACATAGTTAAGGCTGAAGGAATAGACATAAATGAAGAACACAATTATGAATACATGGGTGATGACGTACATGCGAGCAGCGATGAAGAACCTTTAGCGAAGAAAGTAAGGAGAAGTCGAAAACGGAAGAAAACTAACAACGATAAAGGTCACAAACTGAAGGAACGGAATACAAATGAAGATATAAAAGAAGAAACAAGTGCTATAGATAAAAATGATGAAGaaagtaatgataataataccAATGTAGATAGTATAGACCTAATTGAAGATGTAGACGAAATAACTTTGACGAAACAGCAACAAATTGACGAGTTGGAGCTAAGGAAGTCGTCTCAGAATTATGTATATTCCGTTTTCAAGTGTGAGAAGTGTTATAAAGGCTTTATGACGGATGCGACGTACAAGAATCATATGGTCAGACACGATGTGACCTCAGGCGAGCACGAATGCGACGTATGCCTATGCCGGTTCGAGTGCGCTCGCCGGCTGCGCACGCACATCTACACGGCGCATGAAAAGAAGTTCGTGTGCAAGCGGTGCGGACACGTCGCCAAGTCCAAACACAACGCTGTGCAGCACAGGCGCTGGCACGACGGCTTTGTCTACAAATGCGAAATCTGCGGAGCGCTCTTCAGCAAATCGACCAGCCACCTGACGCACGTGCGACTCCGGCACCCGTCCAGGCACGCGTGCGAGGACTGCGGACGGACGTTCCTCGGCCGGTTCGGGCTCGCCATGCATCGGAGGCGGGCTCACAGGGATGTCGAGCCGGAATACAAGTGCGGCCCTTGCGGCTTCGTGTTCAGAGAAGAAGCCGCTTTGAGCGCACACCTCGCCGCGGGCTGCAACGACACACTTAGTTGGTGTGTATTCTGtggggcgggcgcggcgtccCCAGTCGCACTGCGGGACCATCTGAAGACGCACCGCGCTTCCGAGGCCAATGTAACTTGTCGAGAGTGTGGCCGCCAATTCGCTTCGTCCCGCACCTACGCCGTGCACCTAAAGTCGTCCCACAGCCGGGCCCGTGGGCCCAACTCGCCCCGGCCTCGCGCGCGACAACTCGTCTGCGAAGTGTGCGGGTGGAAGTGCAAGTCGGCGTCGACGCTCCGACTCCACCAGCTGGTGCACGCGACGGGCGAGAAGCCGTTCGCCTGCGGCGAGTGCCCCAAGCGGTTCGGGCTCGCGCAGCGGCTCAAGTCCCACATGCGAACGCACACGGGCGAGCGTCCCTTCCGCTGCCCGCGCTGCCCCAAGGCGTTCAAGCAAAAGGCCGCTCTCAACAGACACGACCGGGTCCACAGCGGGGCGAAGCCCTACGCCTGTTCCTACTGCGGGAAGACGTTCTCTCAGTCCAACAGCATGAAGACCCACGAGAAGACGGTGCATTTGAAGCTGCCAGCGCCTTACAGACACGCGAAGAGGAAGGCTGATGAATAG
- Protein Sequence
- MGDILACRVCLITDVKLFNMYNYDLITTYENVIGTQMSEGLPHQLCSICRSLLVKFATFQEKCYNTQHILNIAVLEQVKLTTTYVKSIDRVLYKLESPYSISKPELLSIDSDSENTEYEIKPEADTFLENEENDKSNIVKAEGIDINEEHNYEYMGDDVHASSDEEPLAKKVRRSRKRKKTNNDKGHKLKERNTNEDIKEETSAIDKNDEESNDNNTNVDSIDLIEDVDEITLTKQQQIDELELRKSSQNYVYSVFKCEKCYKGFMTDATYKNHMVRHDVTSGEHECDVCLCRFECARRLRTHIYTAHEKKFVCKRCGHVAKSKHNAVQHRRWHDGFVYKCEICGALFSKSTSHLTHVRLRHPSRHACEDCGRTFLGRFGLAMHRRRAHRDVEPEYKCGPCGFVFREEAALSAHLAAGCNDTLSWCVFCGAGAASPVALRDHLKTHRASEANVTCRECGRQFASSRTYAVHLKSSHSRARGPNSPRPRARQLVCEVCGWKCKSASTLRLHQLVHATGEKPFACGECPKRFGLAQRLKSHMRTHTGERPFRCPRCPKAFKQKAALNRHDRVHSGAKPYACSYCGKTFSQSNSMKTHEKTVHLKLPAPYRHAKRKADE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -