Blac032556.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990066.1:5527049-5532060[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.2e-05 0.0029 19.0 0.1 2 23 39 61 38 61 0.95 2 19 1.6 1.4e+02 4.2 0.1 2 23 87 109 86 109 0.94 3 19 0.12 11 7.8 0.3 2 23 132 153 131 153 0.96 4 19 0.00024 0.022 16.2 0.1 2 23 158 179 157 179 0.96 5 19 1.4 1.3e+02 4.4 0.9 1 22 183 204 183 204 0.92 6 19 1.4 1.3e+02 4.3 0.1 2 11 212 221 211 234 0.84 7 19 2.7e-05 0.0025 19.2 1.5 1 23 241 264 241 264 0.98 8 19 1.6 1.4e+02 4.2 3.4 1 23 268 291 268 291 0.93 9 19 0.26 23 6.7 5.9 1 23 297 319 297 319 0.96 10 19 5.3e-05 0.0048 18.3 1.0 2 23 356 378 355 378 0.95 11 19 1.6 1.4e+02 4.2 0.1 2 23 404 426 403 426 0.94 12 19 0.14 12 7.6 1.1 2 23 449 470 448 470 0.96 13 19 0.00034 0.031 15.7 0.4 2 23 475 496 474 496 0.96 14 19 1.8 1.7e+02 4.0 0.4 1 20 500 519 500 521 0.89 15 19 0.36 33 6.2 0.1 2 20 529 547 528 551 0.75 16 19 0.00031 0.028 15.9 2.3 1 23 558 581 558 581 0.94 17 19 0.18 17 7.2 3.9 1 23 585 608 585 608 0.95 18 19 0.041 3.8 9.2 0.9 1 23 614 636 614 636 0.96 19 19 0.00038 0.034 15.6 0.8 3 23 644 665 642 665 0.86
Sequence Information
- Coding Sequence
- ATGAATGATGAATGGATGAaCGTAGACCCGGAACTGGAAGCGGTCAAGAGGAACGCTATATTGATATTGAGGAACTCGACCGCGTACCCTTTCCTCCAAGGTCTGAGGAACATGAGGTGCGCGTATTGCGGACAGAGTTTCGAGGACCCAGACTTGCTTAGGAGCCATCTCTCGTCAGAGCATCGCTATGAGGATAGGGCCCTTGCGATCAAAACCGACCTCACTCAGCTCAAAACCCGAGTAGACATAACAGATTTGAGTTGCAAACTATGTTCCGAAGCTCAGCCAACGATTGATACGCTGGCGACACATTTAAACACAGAACACAGTATTGATATAGACTTCACGTCAAAACTAGGACTTGTGCAGTATAAACTTGTAAAAGACAATCTCTCGTGTTTCCAATGCGGGGAAAAGGCCATAGGCCTGTACCAGCTCTACCGTCACACGAACAGCCATTTCCATACCCTCATTTGCGATGTCTGTGGAAAAAACTTCGAATCACTCGGCGGTTTTAATACACATATACAGAATCACGTTAAGAAGTTCTACTGCGCCCGTTGCAAGACCGAGTTTCACACAGCCGCCGATCGGAGAGAGCATTATCTCACTAGCGTCAATTGTAGGCCGATAAAATGCCCATACTGCAGCGAGAGATTTGGCTCGATCGAAAGGAAGGATGCGCATTTGGTCGAGGCGCACAACAagccaaaaaaaatatacaaatgcaAGGGGTGCGATAAGGAATTCAATAATCGTAACAGTTTAGGCGTGCACTACAAGTCTACGCATACGGAGTTGCACAAGTGCGATTTCTGTGAGGCCACCTTCGCCTCGCCTCCGGCCAAGAAGATGCACACATACAAATGTCACACCAACGAACGACCGTACCAATGTGACGTTTGCAAGGCGTGCTTCTTCAACGAGTACGTTTACAAGCGCCACAAGATCCACCACGACGAGAGCAAGCaCGTAGACCCGGAACTGGAAGTGGTCCTGAGGAACGCTATATTGATATTGAAAAACTCGACCGCGTACCCTTTCCTCCAAGGTCTGAGGAACATGAGGTGCGCGTATTGCGGACAGTGTTTCGAGGACCCAGACTTGCTTAGGAGCCATCTCTCGTCAAAGCATTGCTATGAGGATAGGGCCCTTGCGATCAAAACCGACCTCACTCAGCTCAAAACCCGAGTAGACATAACAGATTTGAGTTGCAAACTATGTTCCGAAGCTCAGCCAACGATTGATACGCTGGCGACACATTTAAACACAGAACACAATATTGATATAGACTTCACGTCAAAACTAGGACTTGTGCAGTACAAACTTGTGAAAGACAATCTAACGTGTTTCCAATGCGGGGAAAAGGCCATAGGTCTGTTCCAGCTATACCGTCACATGCACAGCCATTTCCATACGCTGATTTGCGACGTGTGTGGAAAAAAATTCGAATCTCTCGGCGGTTTTAACACACATAAACAGAAACACGTTAAGAAGTTCTACTGCGCCCGTTGCAAGACCGAGTTTGACACAGCCGTCGATCGGAGAGAGCATTTCCTCACTAGCGTCACTTGTAGGCCTTTAAAATGTCCCTATTGCACCGAGAGATTCGTCTCGGGTCCAAGTAGAGATGCGCATTTGGTCAAAGCGCACAACAAGCCCAAAAAGATCTACAAATGCAATGGATGTGATGAACAATTCAATAATCATACCAGTTTAAACGTGCATTTCAAAGCTACGCACACAGAGATGCATAAGTGCGATTTCTGTGAAGCCACCTTTGGTACGCCGGCGAACAAGAAGGCACACACTTACAAATGTCACACCAACGAACGACCGTACCAATGTGACGTATGCAAGGCGTCTTTTTTCAGCGAACCCGTTTACAAGCGACACAAATCTCTCCACGATGAGAGCAAGCATATCCGCTGCATCTTCTGTCCCAAAAGCTTCAAAAGGAAGTATATGCTGAAACGGCATGTGGATTTGGAACATCAACTGTGA
- Protein Sequence
- MNDEWMNVDPELEAVKRNAILILRNSTAYPFLQGLRNMRCAYCGQSFEDPDLLRSHLSSEHRYEDRALAIKTDLTQLKTRVDITDLSCKLCSEAQPTIDTLATHLNTEHSIDIDFTSKLGLVQYKLVKDNLSCFQCGEKAIGLYQLYRHTNSHFHTLICDVCGKNFESLGGFNTHIQNHVKKFYCARCKTEFHTAADRREHYLTSVNCRPIKCPYCSERFGSIERKDAHLVEAHNKPKKIYKCKGCDKEFNNRNSLGVHYKSTHTELHKCDFCEATFASPPAKKMHTYKCHTNERPYQCDVCKACFFNEYVYKRHKIHHDESKHVDPELEVVLRNAILILKNSTAYPFLQGLRNMRCAYCGQCFEDPDLLRSHLSSKHCYEDRALAIKTDLTQLKTRVDITDLSCKLCSEAQPTIDTLATHLNTEHNIDIDFTSKLGLVQYKLVKDNLTCFQCGEKAIGLFQLYRHMHSHFHTLICDVCGKKFESLGGFNTHKQKHVKKFYCARCKTEFDTAVDRREHFLTSVTCRPLKCPYCTERFVSGPSRDAHLVKAHNKPKKIYKCNGCDEQFNNHTSLNVHFKATHTEMHKCDFCEATFGTPANKKAHTYKCHTNERPYQCDVCKASFFSEPVYKRHKSLHDESKHIRCIFCPKSFKRKYMLKRHVDLEHQL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -