Blac031965.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- ZIPIC
- Assembly
- GCA_905147135.1
- Location
- LR990065.1:12076005-12092052[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1 93 4.8 0.7 1 23 329 351 329 351 0.96 2 11 0.00013 0.012 17.1 0.2 1 23 358 381 358 381 0.95 3 11 6.5 5.9e+02 2.3 4.7 1 23 385 407 385 407 0.93 4 11 0.00029 0.027 16.0 2.6 1 23 412 435 412 435 0.97 5 11 0.0015 0.14 13.7 1.2 1 23 439 462 439 462 0.93 6 11 0.00061 0.055 15.0 0.1 2 22 475 495 475 499 0.93 7 11 0.047 4.3 9.0 0.4 2 23 524 546 523 546 0.96 8 11 6.9e-05 0.0063 17.9 3.5 2 23 566 587 565 587 0.96 9 11 1e-05 0.00092 20.6 2.4 1 23 593 615 593 615 0.98 10 11 1.4e-07 1.2e-05 26.4 0.5 1 23 622 644 622 644 0.97 11 11 4.7e-05 0.0043 18.5 2.4 1 23 650 673 650 673 0.96
Sequence Information
- Coding Sequence
- ATGGagGTCTGCCGTATTTGCTTGGCGATAGACGCCAAGTTTTACAGTACAAAACAATATAACCTAGAATATTACTATGAAGAAATTACGGGATTGGTGGATGCAGATGAAAGGCTTCCAAGCCACATTTGCTGGGAGTGTGCACACAAACTCGACAGCTTTTACAAGTTCAAAGAGAAAGCGATGAAGTGCCACGACCTCCTGCAAGCATTGCTTTACAAGAATCAAGATCTAAGCCTGAATGCTGTATCAATGGTTGATCGTACCTTGAACGGTCTCGAGTCAGGCCTTTGCATATCAGAATCTGTTGTCATAGACAATTTGGATACAGAGGAGATGGAGGCCATATTGAAAGCTAAGGAGAAACGTAAACCTAAGAAGCGGGAGCTCTTGGCAACTAAAGTAGAGGTAATAGATGACTATAAGGAGCAAACCTTTAAAGTAGAGGATGAAAGCTACGTTGAGCTAGATAACGAAGAAGAATACGTAGAAAATGCAGAAGAATATTATGAAATCCCAATGATGCAGACGACTGCTCAAGAACAACCCGTTAAAGTTGAAGACGCAGCTGAGATTGGTGACCAGCAGATATATTACTTTGATGTGTTGGACAATAATACCAACGAGAACAACGAAGAAGATcaagtttatttgcaagaaagTATGGAGGAGGGTGTTGTAGCCGAAGAGACGGAAGCCTATATGGATGATAGTTCGTACTATGTCACAGATGGCAATGAGACAATGACTGATGACGCAACTACACTTACTCATATGGTAAATGAAATTGAGGAGTCGAGTGAAAACGATGAGGAGGAATCAGCGAATGAGAATGATATGTCCACTGAGATTGTAAGGGAACGGGGTGGAAAGAAAAATACACCGACAGTTATCAATGAACAGATGTTTCACGTGAAGACACTGACTGTCGAGGAGCAGATACAGGAGATTGAGAAGCGTAAAGATCAGATGTTGGACAGGAAATATATCTGTCAGTTTTGCTACAAGGGGTATTTGGATGTTAACGCGTACGACAACCATATGAGGAGACATACAGAGGAAGCAGGCACATACATGTGCGGCATCTGCAAGGTGCGGTTCCCGACGCGCGACAAGCTGAGGCGACATGTCGCGTCCGCCCACACGTACAAGTTCTCCTGCAAGCAGTGCGCTTTTGTTACTACTAGGCGTCACGACGCGAAACATCACGAGGAGTTCCACAACGGGACGCTGTACCAGTGCCCGCATTGCAACGAGAAATTGACCAAATACTCGTCGTACATGGCGCACATCCGCCAGCGGCACCCGTCCGAGTTCGTGTGCGTGCTGTGCGGACACTCGTTCGTCAGCTCCAAGGGACTCGCACAGCATCTAGCTCATAAGCATCGGTTCGAGGAGCATACGGTGCCGCCGACGGGCCCCCGCTGCGACGACTGCGACGTTCGGTTCATCAGTGACAGCGCACTGCAGAGACACCTCAAGGTGGCCGACAGACATCGCCTCGGaatTAGAAGAGAAGGCGCAATATTCTTGAAAAGAAACAAGACTAAAAGTTTCCCTGAGCCAATACCATGTGAACAGTGCGACGAAATGCTCCGCGACTCTCGCACCTATTTCCTCCACTTCCGGAAGGAGCATCCGGATTGCAACCGCACGCGGTTCGAcgccgccgcgctcgccggACGGGAGATGTGCATGTGCGACGTCTGCGGGAAGATGTACCAGAACCAAGCGCACCTCCGCGACCACATGTTCACCCACACCGGCGAACGCACGTTCAAATGTCCGCATTGCGACCGCACATACAACCGGCGGTATGCGATGCTGGTGCATATACGGCAGCATGATGAGCAGAGACGGCAGTACGTGTGCAAGCTGTGCGGGAAGAACTTCGCGAATCCGAGCAACTTGAATCGGCACAAATCGGTGCACACAGGCCTCCGCCCGCACAAGTGCGAGCACTGCGGGAAGGCGTTCAAGCAAGCGCTGGAGATGCGCTCCCATATCAACTATGTGCATCTGAAGAAGCCGTGGCCCAAACGTATCAGGCCCAAGGTCCGCATACGCGTGCGGCAGACGAAGATGGAGGACGATGAAGATGTATGTATGGGTACTCAGACTTGA
- Protein Sequence
- MEVCRICLAIDAKFYSTKQYNLEYYYEEITGLVDADERLPSHICWECAHKLDSFYKFKEKAMKCHDLLQALLYKNQDLSLNAVSMVDRTLNGLESGLCISESVVIDNLDTEEMEAILKAKEKRKPKKRELLATKVEVIDDYKEQTFKVEDESYVELDNEEEYVENAEEYYEIPMMQTTAQEQPVKVEDAAEIGDQQIYYFDVLDNNTNENNEEDQVYLQESMEEGVVAEETEAYMDDSSYYVTDGNETMTDDATTLTHMVNEIEESSENDEEESANENDMSTEIVRERGGKKNTPTVINEQMFHVKTLTVEEQIQEIEKRKDQMLDRKYICQFCYKGYLDVNAYDNHMRRHTEEAGTYMCGICKVRFPTRDKLRRHVASAHTYKFSCKQCAFVTTRRHDAKHHEEFHNGTLYQCPHCNEKLTKYSSYMAHIRQRHPSEFVCVLCGHSFVSSKGLAQHLAHKHRFEEHTVPPTGPRCDDCDVRFISDSALQRHLKVADRHRLGIRREGAIFLKRNKTKSFPEPIPCEQCDEMLRDSRTYFLHFRKEHPDCNRTRFDAAALAGREMCMCDVCGKMYQNQAHLRDHMFTHTGERTFKCPHCDRTYNRRYAMLVHIRQHDEQRRQYVCKLCGKNFANPSNLNRHKSVHTGLRPHKCEHCGKAFKQALEMRSHINYVHLKKPWPKRIRPKVRIRVRQTKMEDDEDVCMGTQT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -