Blac031527.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990065.1:6361965-6386358[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.057 5.2 8.8 2.0 1 23 218 241 218 241 0.96 2 11 0.0024 0.22 13.1 0.3 1 23 248 270 248 270 0.98 3 11 0.022 2 10.0 0.1 1 23 274 297 274 297 0.96 4 11 3.7 3.4e+02 3.0 2.4 1 18 304 321 304 326 0.71 5 11 5.9e-05 0.0054 18.1 0.7 2 23 331 353 330 353 0.92 6 11 5.5e-05 0.005 18.2 0.1 1 23 359 382 359 382 0.94 7 11 0.0057 0.52 11.9 0.3 3 22 394 413 393 417 0.92 8 11 4.5e-06 0.00041 21.7 0.5 1 23 425 448 425 448 0.94 9 11 0.00051 0.047 15.2 2.1 1 23 453 476 453 476 0.96 10 11 1.2e-05 0.0011 20.3 3.6 2 23 484 505 483 505 0.97 11 11 1.6e-05 0.0015 19.9 2.6 1 23 511 534 511 534 0.95
Sequence Information
- Coding Sequence
- ATGGAAAGCAAAGTAAAAGTGAAAAAGTACTATGAAAATCTATGTATGGGCTGTTTGTCTGTAAACCATGCGCTCCAGACAATTACGAATAAGCAAATGCAACAGTTTTACATCGACATTATACATGAAATCGATGCCAATCCTATAGATGGAGAcccaaaaatgtgttttcattGTATAGAGGGTCTCCAAAAGTCCCTCGCGTTCAAGGAGCAAGTGACGGAGTCTTATAAAGCGTTGCTCATGTACCCCGAAAAGTTACTCAACTCTGTGGAGACGGAAACAGACTGCCTTGCCATTCCTGGCAATGGGCAAGCGGACAGCCATGGACGAACTGATATGGACCAAGTGTATATTAAAATGGAAGATGATTTGAAGCACGAGTTTGATGATGAGATAGACACAACAATGCCGGTGGAGGGCTTCTCCTTGGATTCCACGGACAGCGATATGGACAAACCAATTAAGAAActgcaaaaaagtaaaaagctcaAGACGAAAAGTAGGACGAAAAAGTCGGCGACGGAGAAAAATAAGTCGAAGAAGACAAAAAAGGGGAACGACAAAGTAATAACAATTGAATTGTCAGTCGATGAAATGAACAAAGAAAGGGAGCTGGATATGAACAAAGACACTTATCTGAAAGCTTCTTATAAATGCGAGAGCTGCATTATTGGATTCAGCCATTCACAGAGCTATAATAGCCATATGAAGGCCAGGCATGATGggAGTATCGGAGACTACGTCTGTCCGGTTTGCAAGACCGTGGCTGCCTCGCTGGAATCCTTCACTACCCATTATAAGCGACATATGAAAAGGTACGAATGCCGGGCGTGCGGCCTTCGCACCAGCGACGCAAAGGCGATGCGAGCGCACCAGACCCGCGCCCacggcgccgcgccgccgcgctaccGCTGCCAGCGCTGTGGGAAGGTCTCCCAttCAGTGGACGCCCACCGCTACCACCGCGACAGCCACAAGGCGCGCGTGCCGTGCGACCAGTGCGACAAGACCTTCAGCCATCGCGCCGGACTCATGAACCACAGGCTTGCCTTCCACGGCGACCACAACCGCTTCGAGTGTCCGGTCTGCGGCCGCGTGTTCCGCTGGAAGGCCAGCCTCAAACGGCACGCCGCCTCCACGCACCGCCCAGGCGGGCGCTACCTGTCGGGCGCTTCCTGCGCGTCCTGCGACGTTTCCTTCGCGTCGCTGGCTTCCTACCAGCGACATCTCCGCACCAGCCTCAAACACGTCTCGCAGGAGGATTTGAGGTTCATATGCGACGACTGCGGCCGCCGGTTCTCCGACAAGACGAAACTCCGCGACCATATCGAGGAGAAACACCTCCACAAGACTTTCCACTGTCATATATGTAATAAGCCTTCGCGGAATCGTGTGGGCCTAGAACAGCACGTCCGCAACGTGCACCGCGGCCGGCCGCGGGACAAGATGTGCCACCACTGCGGGAAGGGGTTTCCGACGAAGATGCAGCTGGAGTCTCATGTGCGTTCGCATACAGGGGAGAGGCCGTTCATATGCGAGCATTGCCCCACCACTTTCTCGCAACAGAGCAGCCTGTACAAGCACAATCGACAGGTCCACTTGAACATCAAATCGAAGAGGTCTACCCCAAAGAAGAAGGATGAGAAGATACCTGAACCTCCGCCCTTGGAAGTGGAGATGCCGCCCTTGAATCCACCTCTGTCTATAATCCAAGTGCAGTTTAGCAGCGGTTTCATTATGTAA
- Protein Sequence
- MESKVKVKKYYENLCMGCLSVNHALQTITNKQMQQFYIDIIHEIDANPIDGDPKMCFHCIEGLQKSLAFKEQVTESYKALLMYPEKLLNSVETETDCLAIPGNGQADSHGRTDMDQVYIKMEDDLKHEFDDEIDTTMPVEGFSLDSTDSDMDKPIKKLQKSKKLKTKSRTKKSATEKNKSKKTKKGNDKVITIELSVDEMNKERELDMNKDTYLKASYKCESCIIGFSHSQSYNSHMKARHDGSIGDYVCPVCKTVAASLESFTTHYKRHMKRYECRACGLRTSDAKAMRAHQTRAHGAAPPRYRCQRCGKVSHSVDAHRYHRDSHKARVPCDQCDKTFSHRAGLMNHRLAFHGDHNRFECPVCGRVFRWKASLKRHAASTHRPGGRYLSGASCASCDVSFASLASYQRHLRTSLKHVSQEDLRFICDDCGRRFSDKTKLRDHIEEKHLHKTFHCHICNKPSRNRVGLEQHVRNVHRGRPRDKMCHHCGKGFPTKMQLESHVRSHTGERPFICEHCPTTFSQQSSLYKHNRQVHLNIKSKRSTPKKKDEKIPEPPPLEVEMPPLNPPLSIIQVQFSSGFIM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00208163;
- 90% Identity
- iTF_00208163;
- 80% Identity
- -