Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: -
Assembly: GCA_905147135.1
Location: LR990066.1:6250690-6252405[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.5 2.3e+02 3.6 5.3 3 23 2 22 1 22 0.97

2 16 0.2 18 7.1 0.0 3 23 51 72 49 72 0.95

3 16 0.00061 0.056 14.9 1.0 2 23 93 115 92 115 0.96

4 16 0.00012 0.011 17.1 3.8 1 23 120 143 120 143 0.96

5 16 0.00028 0.026 16.0 0.9 1 23 148 171 148 171 0.96

6 16 0.055 5 8.8 1.0 6 23 178 196 178 196 0.94

7 16 0.088 8 8.2 0.2 1 21 202 222 202 223 0.94

8 16 0.0021 0.19 13.3 2.9 1 23 283 306 283 306 0.96

9 16 0.3 27 6.5 0.0 2 23 333 357 332 357 0.90

10 16 6.1e-05 0.0055 18.1 0.8 2 23 380 402 379 402 0.94

11 16 0.0024 0.22 13.1 1.0 3 23 409 430 408 430 0.93

12 16 2.6e-05 0.0023 19.3 2.2 2 23 435 457 434 457 0.92

13 16 0.0068 0.62 11.7 1.2 2 23 463 485 462 485 0.94

14 16 1.3e-05 0.0011 20.3 2.7 1 23 489 512 489 512 0.97

15 16 0.00029 0.026 16.0 2.0 2 23 519 540 518 540 0.97

16 16 5.3e-05 0.0048 18.3 0.7 1 23 546 569 546 569 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.5	2.3e+02	3.6	5.3	3	23	2	22	1	22	0.97
2	16	0.2	18	7.1	0.0	3	23	51	72	49	72	0.95
3	16	0.00061	0.056	14.9	1.0	2	23	93	115	92	115	0.96
4	16	0.00012	0.011	17.1	3.8	1	23	120	143	120	143	0.96
5	16	0.00028	0.026	16.0	0.9	1	23	148	171	148	171	0.96
6	16	0.055	5	8.8	1.0	6	23	178	196	178	196	0.94
7	16	0.088	8	8.2	0.2	1	21	202	222	202	223	0.94
8	16	0.0021	0.19	13.3	2.9	1	23	283	306	283	306	0.96
9	16	0.3	27	6.5	0.0	2	23	333	357	332	357	0.90
10	16	6.1e-05	0.0055	18.1	0.8	2	23	380	402	379	402	0.94
11	16	0.0024	0.22	13.1	1.0	3	23	409	430	408	430	0.93
12	16	2.6e-05	0.0023	19.3	2.2	2	23	435	457	434	457	0.92
13	16	0.0068	0.62	11.7	1.2	2	23	463	485	462	485	0.94
14	16	1.3e-05	0.0011	20.3	2.7	1	23	489	512	489	512	0.97
15	16	0.00029	0.026	16.0	2.0	2	23	519	540	518	540	0.97
16	16	5.3e-05	0.0048	18.3	0.7	1	23	546	569	546	569	0.96

Sequence Information

Coding Sequence: ATGTGTTTCTATTGCGGCCAACATCACACAGATTACCCTGACTTCAAGAAGCATACAAAATCGCACGGTCCGTGTTCGACTACAGACAGAGCTCTGAAGCAAATCCGAGGTAGTCAAGTAGAAGTGAAGATAGATGTGTCGGAAATTGCTTGCGAGATCTGCAGTGAACCGTTTCAAAGTTTCGACGATATCGTCGACCATTTGATCACTGAACATGGCTTGGAATACGATAAAAACGTCGATATCACCTTCCAACAATACCGACTTTCGGATTTGCAGTGCTTGCAATGCGGTCAGCATTTTAAGTACTTCGTTAACTTAGTCAGTCATATCAATGTCAATCACGCTAAAAATCTCTTTAAGTGCGGGCACTGTGGTTATAGTTTCAATAGAAAGATGGACGTGATACATCATATAAAAGACTACCACAGAATTGGTGGTTACCCTTGCGATGTTTGTCAAGAAGTGTTCAAGACGAGAAGGACCTGGCGCACGCATTACAATAACAGCCATTTTGACGAGAGGATATGCTGTCAAATGACTTTTCGACAATATTCTTTATTTCGGAAACATATTGTGTCACGGCATCTCGTTGATGGATTCTTCCAATGTCTGCATTGTGAAGAAAAGTATGTGATGGTACGAGATTTGACGCAACATTGGCAGGTGTGTGAAGGGAAATTGTTGTCCGATGTCACTAAAAAAGAGTCTGCTTGTGAGTTGTCCGAAGACAATGACACTACACTGAAGAAGAAGCTAAACGTTTTATACTTGGCCAAAAAGAGGCAAAACCTAATCTGTGTACTGAACATGTCCAACGTAACGCCATTCAAATTCTTAACGAAGTATTCCTGCTTCCATTGCTCGGAAAAATTCCGGGATTTCGAAGACTTAAAAGTTCACTCGTCGACGGAACATCCTGTCTGGGATATGAACACTAAAGCTATAAAACAAATCGAAGGCGACACTTGTGTTAAGATCGATGTATCCAACCTTTCATGTACCTTTAACTTGTGTGGTCAGTCTCTCGATAATTTAGAAGCTCTGATAGACCATCTTATCAACATACATAAAGCGGAATATGACAAATCTATTACGGGCTGTTTTGATGCATTCAGGATccaaaaagagaaaataaaatgtcCAAAATGTTCCCAAGTGTTCCGTTATTTTACCACTTTACAGAGGCATATGAGTGCTGATCACAgtggcaataaaaatatttgcgaaTGTTGCGGGCGTAGTTTCAAGAAACTGACCAATTTGATCATTCACGTGTCTACGGCGCACAGCGGGCCGGTGCGATGCGATATATGTCCGGAGAAGTTTAAGAACCAGTCGAGTCTCCAGCGGCACAAGGCTAACTGTCACGACGTTAAGCTGGTCAAATGTCCAAAATGTTCAGAAATGTTTGGGTCACATTATCAGAAACAGAGACACCTGATGGACGCCCACGATGACGGTCACAAGTGTAGTTATTGCGGGAGAGTGTACCCGAGGAACTCTCGTTTGCAGGAGCACGTCAGACGCTTTCATAAGAAGGAAAGAAACGTACGATGCACGGTTTGTGACCAGAGATTCTTCGACAGTCATCTCCTTAAATTGCACATGGTGAAGCACGTCGGCGAGAAGATTTTCCAGTGCGATACGTGTGGCAAGTCTTTCTTGCGCAAAAAAGGGTTGGCGCGTCATACTCTGTCTGCGCATAGGTTTTGA
Protein Sequence: MCFYCGQHHTDYPDFKKHTKSHGPCSTTDRALKQIRGSQVEVKIDVSEIACEICSEPFQSFDDIVDHLITEHGLEYDKNVDITFQQYRLSDLQCLQCGQHFKYFVNLVSHINVNHAKNLFKCGHCGYSFNRKMDVIHHIKDYHRIGGYPCDVCQEVFKTRRTWRTHYNNSHFDERICCQMTFRQYSLFRKHIVSRHLVDGFFQCLHCEEKYVMVRDLTQHWQVCEGKLLSDVTKKESACELSEDNDTTLKKKLNVLYLAKKRQNLICVLNMSNVTPFKFLTKYSCFHCSEKFRDFEDLKVHSSTEHPVWDMNTKAIKQIEGDTCVKIDVSNLSCTFNLCGQSLDNLEALIDHLINIHKAEYDKSITGCFDAFRIQKEKIKCPKCSQVFRYFTTLQRHMSADHSGNKNICECCGRSFKKLTNLIIHVSTAHSGPVRCDICPEKFKNQSSLQRHKANCHDVKLVKCPKCSEMFGSHYQKQRHLMDAHDDGHKCSYCGRVYPRNSRLQEHVRRFHKKERNVRCTVCDQRFFDSHLLKLHMVKHVGEKIFQCDTCGKSFLRKKGLARHTLSAHRF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -