Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: ham
Assembly: GCA_905147135.1
Location: LR990055.1:8394664-8431110[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.048 4.4 9.0 0.0 2 23 255 277 255 277 0.94

2 9 0.00094 0.086 14.4 0.6 1 23 284 307 284 307 0.93

3 9 2.4e-08 2.2e-06 28.8 0.1 1 23 313 336 313 336 0.96

4 9 2.1e-06 0.00019 22.7 1.7 1 23 342 364 342 364 0.95

5 9 7.4e-05 0.0067 17.8 6.1 1 23 370 392 370 392 0.99

6 9 9.8e-05 0.0089 17.5 0.6 2 21 400 419 399 420 0.94

7 9 1.8e-08 1.6e-06 29.2 0.7 1 23 817 839 817 839 0.98

8 9 6.4e-07 5.8e-05 24.3 1.7 1 23 845 868 845 868 0.97

9 9 6.9e-06 0.00063 21.1 3.3 1 23 874 896 874 896 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.048	4.4	9.0	0.0	2	23	255	277	255	277	0.94
2	9	0.00094	0.086	14.4	0.6	1	23	284	307	284	307	0.93
3	9	2.4e-08	2.2e-06	28.8	0.1	1	23	313	336	313	336	0.96
4	9	2.1e-06	0.00019	22.7	1.7	1	23	342	364	342	364	0.95
5	9	7.4e-05	0.0067	17.8	6.1	1	23	370	392	370	392	0.99
6	9	9.8e-05	0.0089	17.5	0.6	2	21	400	419	399	420	0.94
7	9	1.8e-08	1.6e-06	29.2	0.7	1	23	817	839	817	839	0.98
8	9	6.4e-07	5.8e-05	24.3	1.7	1	23	845	868	845	868	0.97
9	9	6.9e-06	0.00063	21.1	3.3	1	23	874	896	874	896	0.98

Sequence Information

Coding Sequence: ATGCCCGTGACACGACCCATTCTTATAAGTAGAAAGAAGCATACTGTAACTGACGCAGCAGATAGCCAGGAGTCTGGCAGCCCTCCGCCGAGCCCGACTGACTCCGCTACCTCCGAGTCGGCACCCACCTTAGTCCACATCAAGCAGGAGATGCCTCCAGGGACGGACCACAAGGAATACTACGGGTCGATCGACTTCGCCCACCCTGAGTCCTACCTCCCGTCGAACTATCCCGACTACGGGCGGTACTTGCCGCGGACTTTGGATTACAAGTATGACGCAAATGAGAAAGAGAAAGAGGAAAAAGATGATAGAGATGAAGAATACAACCTGCCGACGGAGTTGGTGATCAAGGGTGGCGCTGTGTTCGCGAGGGCGAGCATTTGCAGCGGAACCAAGTACGGACCGTTCGTCGGCAAATGGGAGACGCAGCCGCTGGACCGCAGATTCGCTTGGGAGGTTCTCGGCAAAAACGGCATCCGCGGCTGGCTAGACGGCACTGCTGAGAAGTCGAACTGGTTAAAACTGGTTCGTTCTACAAACTACCCTCACGACGTAAACATCCAGCACCTCTTACTTGCTGGTCAGGTGTGGTACAAAGTGACCCGCGACGTGCAGTCAGGCCAAGAGTTGCTTCTAGGCCCTAGGACTCCACTACCTCTCCAGGACGTGCTCACACCACCAGACCGGCAGAGCTCGGTGACCTCCTCAGCAGGCTCCCAACCGCCCACGGAGGACGAGGAACGAGAGGAAACGGAACCACGGTGCTCTTTCTGCGACGCTCCTTTCCCTAATATTGACGCTCTCGACCGCCACCTGATCCAGGCACATGCACAGCCAGCATCAGCCTTCCACTGCGAGCTCTGCAACCGCGCGTACAGCTCCCGCGCCCTGCTGCTGAGACACCGCGCCCTCGCACACACCGACATCAGGAAATACCCCTGCGAGAATTGCCCTAAGGTATTTACCGATCCTTCCAACCTTCAGCGCCACATACGCGCGCAGCACGTGGGCGCGCGCAGCCACGCTTGCCCCGAGTGCGGGAAGACCTTCGCCACCTCCTCCGGCCTGAAGCAGCACACGCACATACACTCCAGCGTCAAGCCTTTCCAGTGCAAAGTTTGCTTCAAGGCCTACACGCAGTTTTCCAACCTCTGCCGCCACAAGCGAATGCATGTCGCCTGCAGAGCACTGATTGAATGCCAGAAGTGCGGCCAGTCGTTTACATCATACGCTTCTCTTACCAAACACAAGAGATTTTGTGACACCGCCGCCGCTGCTAACGTCAATCTTCGAGGACCAATGCCTCAGGGACTGCCCCAGATTCCATCCCTACCCAACGTCGGAATGAATACCCCTAATAATGCAAACCCCTTTTCCATGTATAGGGGACCAACCCTTCCCCATCCATATAATACTTTCGCTCACCACTACCCGGCTTTGTTCTCTGCCGCTGCGGCCGCTTGCCCTCCAGACTTCTTAAACCCGCTACGACTGTTCAACGTCCAAGGTGGAGTCTTAGCAATGGAACAGGAAATCGCATTATCAAACGCTAATTTGGCTAAACAGCAAGAAGGACGCATGTCTGTGAAAAGCATCGACAGCTCTACTTCACTCGACGATATGAAGAAGAAAGATATCGATTTCGATAAGAAAGACACAGATGAGGAGAGGATCTCTCCTAAGCCTCAACGCATGTATGTCAAGTCACCAATGTCGACAGATGACTTATCTCAGCAACGTCCTATGCCCGTCCTTCCGATGACCACTCCAATCGTACCATACAACTTTACCAGAGACGAGAAACGTAGATCACCCTTCAATTTTTCATTAAAACTGAATAATAACGATATACAAGAAGCAAACAAAGCTGTTTCGCCTTCATTACCCAAAGACTTATCAAAGAACATCGACAAAGATGATGATAAGAACTCTGAATATTCAGACGTAGATGAGGAATCGAAAAAAGATCAAGGAGATCAGCCTCTCGATTTATCGGTTTCCCGGAAACAAAATGACAAGGAGTCCGAGGCCGACATCGACGACCGTTCCTTTCGTAACTCTTCTGTCAAGTCGTATTCTCCACCGGAGAGTCCAGCCGGCCGCGAGAGCAAGACCCCTGAGAACGAAACCACTGACGTCGATGTGGAGGGCGTAGAACCGAAGAGAGAGGATTCTCCTCCGCAGCTCGTAACTCGGCCGCTAGCGTTCCCGATGGCCGACTACCCTCAGCACAACAGCAGTTTAATCGACGCCATGTACCGCCCAAGATTTCCGTCCTTCCACACGGCGTCCGACGCCATCCTGAACTCGTCGCACTCCCCGTACGTCCCGAGTCCGTTCAATTTTTTATCCCCACTTCTTGGCACGGACGGCCCCGATAGGCAACAGAGCGTGTACTCCAAGTTCCGCGAGCTGAACGCCGGTCCGGGGAAGCTTCGGGATCGGTACGCCTGCAAGTTCTGCGGGAAAGTGTTCCCTCGCAGCGCGAACCTGACGCGGCACCTCCGCACGCACACCGGCGAGCAGCCCTACAAATGCAAGTACTGCGAGCGTTCCTTCTCGATATCCTCGAACCTGCAGCGGCACGTTCGGAACATCCACAACAAGGAGCGGCCCTTTCGGTGTCCGCTGTGCGACCGGTGCTTCGGACAGCAGACCAACCTCGACCGGCACCTGAAGAAGCACGAGGCGGAAGGCGGGGACTCTCCGAGCTCGGCTGATACTGAGCGGGAGGATGCGTACTTTGACGACATCCGGTCGTTTATGGGGAAGGTGACGTGTTCCCCCGGGGCTCGTTCCCCGCCCCCGGCGTCTCCCCACGCGGCGCCGCACCGCCCTTCAGCTCTAGCGATCTCCACATAG
Protein Sequence: MPVTRPILISRKKHTVTDAADSQESGSPPPSPTDSATSESAPTLVHIKQEMPPGTDHKEYYGSIDFAHPESYLPSNYPDYGRYLPRTLDYKYDANEKEKEEKDDRDEEYNLPTELVIKGGAVFARASICSGTKYGPFVGKWETQPLDRRFAWEVLGKNGIRGWLDGTAEKSNWLKLVRSTNYPHDVNIQHLLLAGQVWYKVTRDVQSGQELLLGPRTPLPLQDVLTPPDRQSSVTSSAGSQPPTEDEEREETEPRCSFCDAPFPNIDALDRHLIQAHAQPASAFHCELCNRAYSSRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALIECQKCGQSFTSYASLTKHKRFCDTAAAANVNLRGPMPQGLPQIPSLPNVGMNTPNNANPFSMYRGPTLPHPYNTFAHHYPALFSAAAAACPPDFLNPLRLFNVQGGVLAMEQEIALSNANLAKQQEGRMSVKSIDSSTSLDDMKKKDIDFDKKDTDEERISPKPQRMYVKSPMSTDDLSQQRPMPVLPMTTPIVPYNFTRDEKRRSPFNFSLKLNNNDIQEANKAVSPSLPKDLSKNIDKDDDKNSEYSDVDEESKKDQGDQPLDLSVSRKQNDKESEADIDDRSFRNSSVKSYSPPESPAGRESKTPENETTDVDVEGVEPKREDSPPQLVTRPLAFPMADYPQHNSSLIDAMYRPRFPSFHTASDAILNSSHSPYVPSPFNFLSPLLGTDGPDRQQSVYSKFRELNAGPGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPPPASPHAAPHRPSALAIST*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00943055;
90% Identity: iTF_00208126;
80% Identity: -