Blac009114.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990044.1:7306315-7309835[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.37 33 6.2 5.2 1 23 150 172 150 172 0.98 2 13 0.00025 0.023 16.2 4.9 2 23 182 203 181 203 0.96 3 13 8.7e-06 0.00079 20.8 3.3 1 23 210 232 210 232 0.98 4 13 0.00082 0.075 14.5 0.6 2 23 252 273 251 273 0.97 5 13 0.0043 0.39 12.3 2.9 3 20 282 299 280 302 0.92 6 13 0.0025 0.22 13.1 2.1 1 23 308 330 308 330 0.94 7 13 4e-05 0.0036 18.7 3.5 1 23 336 358 336 358 0.97 8 13 1.1e-07 1e-05 26.7 1.4 1 23 364 386 364 386 0.96 9 13 1.4e-05 0.0013 20.1 0.4 1 23 392 414 392 414 0.98 10 13 1.4e-05 0.0013 20.1 0.8 2 23 421 442 420 442 0.97 11 13 0.00034 0.031 15.8 6.9 1 23 448 470 448 470 0.96 12 13 2.9e-06 0.00026 22.3 0.7 1 23 476 498 476 498 0.98 13 13 6.5e-05 0.0059 18.0 1.8 1 23 504 526 504 526 0.97
Sequence Information
- Coding Sequence
- ATGGCATCTATAACACTTTCCGAAAACTATGATAACTGTTGTCGCACTTGTTTGAACGATGCATCGAATAAAATGTTCGATATTTTCACTGAGAAAGAGGACACAGCCAACGTAGCTGAAATTCTCGCTTCGTGTACGTCAGTAAAGgTGAATAAAGAAGACTCACTGCCTAAGAAACTATGTAGCAGCTGCTACAACTGTCTTATGAGCTTTATGGACTTCCGGAAGCTGGCTGAGAAAATTGACATAAAGTTACGATGTCAAGAAACAAAAATTGAGGAgaaacaggaaaattttaaacttaaaaatgatGTGATGATAACAATAAAGATGGAAAATGAGAATCATATGTATAGGGAAAATATGGATTATGAGATAGACAATGATTATTCAGATTCTGAGCCATTGGTAAAGGTAGAAAAATTAGAGTCTAATGATTCGTTAACATTCTGTTGCTCTGTATGCTTTCAGAACTGTGATAATATAACTGAACTCCAAGAACACTACAAGACACATTCTAAAGTTGATTTTAAGTCTAGCCTGAAATGTGACATTTGTGACAAAAAGTTTAGAAAGTTTTCAAAGCTTGAGCATCATAAATTGAAACACACCACACCTCAGGAGTTATTCACTTGTGATATTTGTTCAGAGTCTTTTAGACATAACTATAAACTTATTAGGCATTTGACAACTCACAAGGATGGTGAGATATCTACGTCAGAAGTGAAAGAAAGTGATACAGATGTAAAGTTGGAATGTGATGTGTGTTCAGCACATTTCAAATCCATCAATTCCCTGGCTGCTCATCAACGGAAACACACAAAGAAAGGAAGGGTGTTAGCCTGTTCGTTATGTGGGAAAGTTTTCAAAAAAGTCAGCCATGTTAAGAGACATGAGCTTTGTCATGAAGTCAATAGGCCTTATAAATGTGTGTTGTGTCCGAAGAGATTTAATACGGAAGCACTTCTCAACGAACATTGTAATAAACATAAAGGAATTAAGGCCCATTCATGTCCACTATGTTCAAAATCATTCACTCATATGGCCTCGTTAACAACTCACTTGAAAATTCATACCAGAGATAAACCGTTTTTGTGCCCAACGTGTGGAAAGAGATTTGATTCAAGTACGAATTTGAACCAGCATATGAGGAGGCACATTGGACTCAAAGCATATGCATGCACTCTGTGCCCAAGAAGATTTGTTAGTAAAGGTGAACTTAAGTCACATACAATAACCCACACTGGCGAGAAGCAATGGACGTGCGACCAGTGCGGGGCCACGTTTACGAAGCGGAGTTCGTTGGAGCAGCACAGACTGCGGCACCTTGGCCTCAAGCCTCACCACTGTGACGCTTGTCCTATGAAGTTTACGACAAAAGACCATCTGAAACGGCACTACCGCATCCACACGGGCGAGAAACCATACAAATGCGAGATGTGCGAGCGTGCCTTCACACAGAGCAATGATCTGGTGAAACACCGTCGCGCGCACGTCGGTGATAAGTTATACAAGTGTACGGAATGCAACGAAGGTTTCCGCCTGTACTCCGAGCTCCGCCACCATATCTCCGAACACTTCATATCCGTACAAATGAAAGCGCTATCTGTCGACAAAACTGAGAAACTACAAACAGATAACGTCACCATGAATGGTTTCGGGGAAGAGCTAACGAAGAAGGATAATGGTATAAGTGTTCTAAGTGATAAAGACATTGATATAATTGCTCTAAGCGATGACAAAGACATCAATATAGGTGCTCTAACCAGTACTGATAAATGA
- Protein Sequence
- MASITLSENYDNCCRTCLNDASNKMFDIFTEKEDTANVAEILASCTSVKVNKEDSLPKKLCSSCYNCLMSFMDFRKLAEKIDIKLRCQETKIEEKQENFKLKNDVMITIKMENENHMYRENMDYEIDNDYSDSEPLVKVEKLESNDSLTFCCSVCFQNCDNITELQEHYKTHSKVDFKSSLKCDICDKKFRKFSKLEHHKLKHTTPQELFTCDICSESFRHNYKLIRHLTTHKDGEISTSEVKESDTDVKLECDVCSAHFKSINSLAAHQRKHTKKGRVLACSLCGKVFKKVSHVKRHELCHEVNRPYKCVLCPKRFNTEALLNEHCNKHKGIKAHSCPLCSKSFTHMASLTTHLKIHTRDKPFLCPTCGKRFDSSTNLNQHMRRHIGLKAYACTLCPRRFVSKGELKSHTITHTGEKQWTCDQCGATFTKRSSLEQHRLRHLGLKPHHCDACPMKFTTKDHLKRHYRIHTGEKPYKCEMCERAFTQSNDLVKHRRAHVGDKLYKCTECNEGFRLYSELRHHISEHFISVQMKALSVDKTEKLQTDNVTMNGFGEELTKKDNGISVLSDKDIDIIALSDDKDINIGALTSTDK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00208127;
- 90% Identity
- iTF_00208127;
- 80% Identity
- -